Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37110 303 / 1e-104 PLAC8 family protein (.1) AT2G40935 73 / 1e-15 PLAC8 family protein (.1.2.3) AT1G68630 52 / 3e-08 PLAC8 family protein (.1) AT3G18460 42 / 9e-05 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023176 [exp] 411 / 5e-147 AT2G37110 299 / 7e-103 PLAC8 family protein (.1) Lus10019922 [exp] 348 / 4e-122 AT2G37110 303 / 3e-104 PLAC8 family protein (.1) Lus10026492 [exp] 307 / 5e-106 AT2G37110 290 / 3e-99 PLAC8 family protein (.1) Lus10005257 [exp] 66 / 8e-13 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10004063 [exp] 40 / 0.0004 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10008890 [exp] 39 / 0.001 AT1G68630 119 / 6e-35 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130300 [exp] 315 / 3e-109 AT2G37110 320 / 1e-111 PLAC8 family protein (.1) Potri.016G087200 [exp] 310 / 2e-107 AT2G37110 309 / 4e-107 PLAC8 family protein (.1) Potri.006G024900 [exp] 69 / 5e-14 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.008G132775 [exp] 42 / 0.0001 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 42 / 0.0001 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10015072 pacid=23171541 polypeptide=Lus10015072 locus=Lus10015072.g ID=Lus10015072.BGIv1.0 annot-version=v1.0 ATGGCGGAAAACAACAGCATTAACACCACAAACACCCTCAGCTCCTGCAATAAAGATCGCGTGGAATCCAGCCCTCTCTTGAACAAGACAATGGATGAAC AAGCATCCGTCGCCAAGACCGCTGCAGCGAAATCGGCGGTGCGTGGATGGACGGCTAATGGATTGCCGTTAGGTCACGGAAACGTGGCGGGTCAGCCTAT GAACCGTGGGCAATGGGATTCCGGGATCTGCGCTTGCCTTGGTCGCAACGATGAATTCTGCAGCAGCGATCTTGAAGTCTGTCTTATTGGAAGTGTTGCA CCTTGTGTGTTGCATGGAAGCAATGCTGAACGATTGGGATCCACTCCTGGAACATTTACAAACCATTGTTTGCCTTACACTGGCCTTTACTTGATTGGTA ATTCCTTGTTCGGTTGGAACTGCCTTGCTCCATGGTTTTCTTACCCTGGCCGAACTGCTATGCGCCGCAGGTTTAATCTCGAGGCAAGTTATTCCAATGC AACTTATCATTTGAATGGAAGCTGCGAGGCAGTTAATAGGTCATGTGGATGCTGTGGGAGCTGCGTGGACGACGAATTCCAGCGAGAGCAGTGTGAAACA GCATGTGATTTTGCTACTCATGTATTCTGCCACCCATGCGCACTTTGCCAGGAAGGCCGTGAGATTCGTCGCAGGGTGCCTCATCCTGGCTTGAAGCCTC AGTCGATGCTGGTTATGCTCGCTCCTGGAGAGCAGACCATGGGGCGTCAGGCTTGA
AA sequence Show only first row Show all	>Lus10015072 pacid=23171541 polypeptide=Lus10015072 locus=Lus10015072.g ID=Lus10015072.BGIv1.0 annot-version=v1.0 MAENNSINTTNTLSSCNKDRVESSPLLNKTMDEQASVAKTAAAKSAVRGWTANGLPLGHGNVAGQPMNRGQWDSGICACLGRNDEFCSSDLEVCLIGSVA PCVLHGSNAERLGSTPGTFTNHCLPYTGLYLIGNSLFGWNCLAPWFSYPGRTAMRRRFNLEASYSNATYHLNGSCEAVNRSCGCCGSCVDDEFQREQCET ACDFATHVFCHPCALCQEGREIRRRVPHPGLKPQSMLVMLAPGEQTMGRQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	0	1
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	3.0	0.8565
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	3.9	0.8448
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	4.0	0.8310
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	4.0	0.8436
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	4.5	0.8181
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	4.9	0.8543
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	5.0	0.8431
AT1G03070			Bax inhibitor-1 family protein...		Lus10004077 [exp]	6.9	0.7997
AT5G51040			unknown protein		Lus10043024 [exp]	10.8	0.8188
AT1G52190			Major facilitator superfamily ...		Lus10037896 [exp]	11.9	0.7491

Compare expression of checked genes

Lus10015072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.