Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37120 46 / 4e-08 S1FA-like DNA-binding protein (.1) AT3G09735 41 / 3e-06 S1FA-like DNA-binding protein (.1) AT3G53370 36 / 0.0003 S1FA-like DNA-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023177 [exp] 126 / 2e-39 AT2G37120 68 / 1e-16 S1FA-like DNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087400 [exp] 84 / 6e-23 AT3G09735 41 / 3e-06 S1FA-like DNA-binding protein (.1) Potri.006G130200 [exp] 81 / 1e-21 AT3G09735 / S1FA-like DNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04689 [flax] [poplar] S1FA DNA binding protein S1FA
Representative CDS sequence Show only first row Show all	>Lus10015073 pacid=23171497 polypeptide=Lus10015073 locus=Lus10015073.g ID=Lus10015073.BGIv1.0 annot-version=v1.0 ATGTCCGACGATTCCGAGTTCGCCGATCAGTCCACTCCCTCATTTGAGCGCATGGGAAAGGCGATGAAGGACGCGGAGGCTAAAGGGTTCAACCCAGGAC TGATAGTGTTGCTGGTTATAGGAACCCTGGTTCTGGCATTCCTGATCGGGAATTATGCGTTGTACATGTATGCTCAGAAGACTCTTCCTGCTAGGAAGAA GAAGCCAGTGTCCAAGAAGAAGATGAAGAGGGAAAGACTGAAGCAAGGCGTGTCTGCACCTGGAGAGTGA
AA sequence Show only first row Show all	>Lus10015073 pacid=23171497 polypeptide=Lus10015073 locus=Lus10015073.g ID=Lus10015073.BGIv1.0 annot-version=v1.0 MSDDSEFADQSTPSFERMGKAMKDAEAKGFNPGLIVLLVIGTLVLAFLIGNYALYMYAQKTLPARKKKPVSKKKMKRERLKQGVSAPGE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37120			S1FA-like DNA-binding protein ...		Lus10015073 [exp]	0	1
AT3G15395			unknown protein		Lus10039067 [exp]	1.0	0.8313
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10029234 [exp]	1.4	0.8012
AT2G26110			Protein of unknown function (D...		Lus10026978 [exp]	7.5	0.7084
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031323 [exp]	7.9	0.7462
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	8.1	0.7390
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	8.8	0.7520
AT2G37120			S1FA-like DNA-binding protein ...		Lus10023177 [exp]	9.2	0.7906
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10010413 [exp]	12.0	0.7663
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	13.0	0.7417
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10042338 [exp]	13.2	0.7562

Compare expression of checked genes

Lus10015073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.