Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37130 483 / 3e-173 Peroxidase superfamily protein (.1.2) AT4G21960 359 / 3e-124 PRXR1 Peroxidase superfamily protein (.1) AT5G17820 220 / 7e-70 Peroxidase superfamily protein (.1) AT5G66390 220 / 2e-69 Peroxidase superfamily protein (.1) AT3G50990 217 / 3e-68 Peroxidase superfamily protein (.1) AT3G17070 215 / 1e-67 Peroxidase family protein (.1) AT2G18140 213 / 6e-67 Peroxidase superfamily protein (.1) AT2G18150 213 / 1e-66 Peroxidase superfamily protein (.1) AT3G03670 212 / 1e-66 Peroxidase superfamily protein (.1) AT4G26010 208 / 3e-65 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006778 [exp] 371 / 9e-129 AT4G21960 540 / 0.0 Peroxidase superfamily protein (.1) Lus10020045 [exp] 333 / 4e-114 AT4G21960 490 / 6e-176 Peroxidase superfamily protein (.1) Lus10041784 [exp] 226 / 1e-71 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10018375 [exp] 199 / 2e-61 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10004234 [exp] 198 / 4e-61 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 197 / 1e-60 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10001324 [exp] 195 / 7e-60 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005679 [exp] 194 / 1e-59 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10010634 [exp] 194 / 3e-59 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129900 [exp] 503 / 0 AT2G37130 489 / 2e-175 Peroxidase superfamily protein (.1.2) Potri.004G015300 [exp] 376 / 9e-131 AT4G21960 538 / 0.0 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 221 / 5e-70 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 216 / 4e-68 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.013G066800 [exp] 212 / 2e-66 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 200 / 5e-62 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 199 / 1e-61 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 199 / 2e-61 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 198 / 4e-61 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 197 / 1e-60 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10015074 pacid=23171495 polypeptide=Lus10015074 locus=Lus10015074.g ID=Lus10015074.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCGGCGCCGCAAACATTTTCACATCACTCTTCGTTCTCTACTTCTGCCTCGCCACTCAGTTCCACTCTGGGAAAAGCCAGCTCCAGTCGA ACTACTACGAACAGAGCTGCCCAAGAGCTGAAGCCATCGTGAAAGAGCAAGTCATCAAGCTTTACCATCAACATGGAAACACCGCCGTCTCTTGGCTCCG CAACCTCTTCCACGACTGCGTCGTCAAGTCTTGCGACGCTTCTCTGTTACTCGAATCGGTGAATGGAATCCAATCGGAGAAGAACTCCGGCAGGAGCTTT GGTATGAGGAATTTCAAATACGTCACCACCATCAAACACGCTCTCGAGGCCGAGTGCCCTTCCACCGTTTCCTGCGCCGACATCGTCGCTCTCTCTGCCC GTGACGGGATTGTTATGCTAGGAGGCCCTAGAATGGAGCTGAAAACAGGGCGAAAGGACAGCAAGCAGAGCTACTTAGCAGAAGTAGAAAGCTCCATCCC AAACCACAACGACTCTATCTCTGCCGTACTCACCCGATTTCAATCCATGGGCATCGACGTAGAAGGCACCGTCGCTCTCTTGGGGGCCCACTCGGTGGGC CGGGTCCACTGCGTCAACTTGGTGGGCCGACTCTATCCCGCCGTGGACCCGGCTCTGGACCCGGTCTACGCTAGCTACCTAAAGGCCCGTTGCCCGAGCC CCAACCCGGACCCAAATGCGGTCTTGTACTCAAGGAACGACCGTGAGACGCCGATGATTCTGGACAATATGTACTACAAGGGCCTGCTGAAGAACAAGGG GCTGCTCTCCGTGGACCAACAGCTGGCTACTGATCCTCGTACGGCACCGTTTGTGGGGAGGATGGCTGCTGATAATGACTACTTCCACGAGCAGTTCGCT AGAGCGGTGGTTTTGCTGTCGGAGAACAATCCGGTCACGGGCAGTGATGGAGAGGTGAGAAAGGATTGCCGGTATGTGAATGTCAGTTAA
AA sequence Show only first row Show all	>Lus10015074 pacid=23171495 polypeptide=Lus10015074 locus=Lus10015074.g ID=Lus10015074.BGIv1.0 annot-version=v1.0 MAAAGAANIFTSLFVLYFCLATQFHSGKSQLQSNYYEQSCPRAEAIVKEQVIKLYHQHGNTAVSWLRNLFHDCVVKSCDASLLLESVNGIQSEKNSGRSF GMRNFKYVTTIKHALEAECPSTVSCADIVALSARDGIVMLGGPRMELKTGRKDSKQSYLAEVESSIPNHNDSISAVLTRFQSMGIDVEGTVALLGAHSVG RVHCVNLVGRLYPAVDPALDPVYASYLKARCPSPNPDPNAVLYSRNDRETPMILDNMYYKGLLKNKGLLSVDQQLATDPRTAPFVGRMAADNDYFHEQFA RAVVLLSENNPVTGSDGEVRKDCRYVNVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	0	1
AT2G42760			unknown protein		Lus10015228 [exp]	2.4	0.9448
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	2.4	0.9554
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	3.7	0.9578
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	3.9	0.9541
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	4.5	0.9389
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	5.3	0.9325
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10002329 [exp]	5.5	0.9203
AT2G20080			unknown protein		Lus10012982 [exp]	7.3	0.9394
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	7.5	0.9524
AT1G08920		ESL1	ERD (early response to dehydra...		Lus10033814 [exp]	8.0	0.9187

Compare expression of checked genes

Lus10015074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.