Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65980 268 / 3e-93 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT1G65970 259 / 4e-90 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G60740 257 / 3e-89 Thioredoxin superfamily protein (.1) AT1G65990 188 / 1e-57 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1) AT3G52960 175 / 8e-56 Thioredoxin superfamily protein (.1) AT3G06050 107 / 2e-29 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023180 [exp] 328 / 2e-117 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023662 [exp] 312 / 7e-111 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2) Lus10002843 [exp] 176 / 5e-56 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1) Lus10003373 [exp] 175 / 7e-56 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1) Lus10021932 [exp] 107 / 4e-29 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1) Lus10041218 [exp] 93 / 1e-22 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423500 [exp] 283 / 1e-99 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.018G083500 [exp] 280 / 4e-98 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2) Potri.013G102100 [exp] 174 / 2e-55 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.019G024000 [exp] 100 / 1e-26 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10015077 pacid=23171510 polypeptide=Lus10015077 locus=Lus10015077.g ID=Lus10015077.BGIv1.0 annot-version=v1.0 ATGGCTCCGATAGCTGCCGGTGCTTCCTTGCCTGACGGAACTCTCGCTCACTTCGACGAGAACGATCAGCTCCAGCAGGTCTCCATCCACTCCCTCGCCG CTGGCAAGAAGGTTGTCATCGTCGGTGTTCCCGGCGCCTTCACTCCAACTTGCAGCTTGAAGCATGTACCTGGATTCATCGAGAGAGCGGATGACCTCAA AGCCAAAGGTGTTGCAGAGATAATCACTATTAGCGTGAATGATCCATTTGTGATGAAAGCTTGGGCAAAGACCTTCCCAGAGAACAAGCACGTGAAGTTC TTGGCAGATGGCTCTGCAACTTACACCCATGCTCTGGGTGTTGAGCTTGACCTAAAGGAGAAGGGACTAGGGATCAGATCAAGGAGGTTTGCTCTACTGG TCGATGACCTCAAGGTGAAGGCTGCAAACATTGAAGATGGTGGAGACTTCACAGTTTCGAGTGTTGATGATATCATCAAGGCCCTTGATGCTTGA
AA sequence Show only first row Show all	>Lus10015077 pacid=23171510 polypeptide=Lus10015077 locus=Lus10015077.g ID=Lus10015077.BGIv1.0 annot-version=v1.0 MAPIAAGASLPDGTLAHFDENDQLQQVSIHSLAAGKKVVIVGVPGAFTPTCSLKHVPGFIERADDLKAKGVAEIITISVNDPFVMKAWAKTFPENKHVKF LADGSATYTHALGVELDLKEKGLGIRSRRFALLVDDLKVKAANIEDGGDFTVSSVDDIIKALDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10015077 [exp]	0	1
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	3.5	0.8393
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	4.9	0.8503
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	6.3	0.8344
AT4G14010		RALFL32	ralf-like 32 (.1)		Lus10023223 [exp]	7.1	0.8263
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	8.6	0.8600
AT4G16450			unknown protein		Lus10038803 [exp]	9.7	0.8130
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	15.7	0.8424
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	19.1	0.8044
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	21.6	0.8203
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	22.4	0.8337

Compare expression of checked genes

Lus10015077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.