Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03160 603 / 0 ATP58IPK homolog of mamallian P58IPK (.1) AT5G01390 80 / 1e-16 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 80 / 2e-16 DNAJ heat shock family protein (.1.2) AT2G20560 79 / 6e-16 DNAJ heat shock family protein (.1) AT3G08910 79 / 6e-16 DNAJ heat shock family protein (.1) AT4G39960 79 / 1e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 79 / 2e-15 DNAJ heat shock family protein (.1) AT1G80030 76 / 2e-14 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G56300 71 / 2e-14 Chaperone DnaJ-domain superfamily protein (.1) AT2G41520 75 / 6e-14 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019928 [exp] 757 / 0 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1) Lus10026498 [exp] 676 / 0 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1) Lus10023181 [exp] 641 / 0 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10013981 [exp] 82 / 1e-16 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10017687 [exp] 81 / 2e-16 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10041254 [exp] 81 / 2e-16 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 80 / 3e-16 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10015402 [exp] 79 / 1e-15 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10011484 [exp] 79 / 2e-15 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088600 [exp] 678 / 0 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1) Potri.007G136700 [exp] 86 / 6e-18 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 83 / 4e-17 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 82 / 4e-17 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 82 / 8e-17 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 83 / 9e-17 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 80 / 4e-16 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 80 / 6e-16 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 78 / 2e-15 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G113400 [exp] 74 / 4e-15 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10015078 pacid=23171543 polypeptide=Lus10015078 locus=Lus10015078.g ID=Lus10015078.BGIv1.0 annot-version=v1.0 ATGACGAATCTGATTTATTCATGGGCACGGGATGTAGTGGCGTGGAGAGGATTGGTGTATACCATCTTCATTCTGCATTTCGTATTCGTTTGCCAGATTC TGCTTCTCCAACCTCTCGTCTCCGCTTCAGACAGTAAAACTAAAACCGTTGCGGAATTGTTCGAGAGGGTATCTCAAAGTGTAAAACTCAAGCGCTATAG TGATGCACTTGATGATCTAAATTCGGCAATTGAGGCAGATCCAATGCTTTCTGAAGCATATCTTCGGCGTGCGTCCATTCTTCGTCAAATATGCAGATAT GATGAATCAGAAACGAATTACCAAAAGGTTCTGGAGCTAAAACCTGGACATTCAGCAGCCGAGAAGGAGCTTTCTCAGCTAAATCAAGCAAAGAATGCAC TGGATTCAGCTTTAAGCCATTTTAGTTCCGGGGATCATTCAAAGGCTTTAGAGTTTGTTCAAAAAGTTGTGCTTGTTTTTTCTCCAGCCTGCTCAAAGGC TAAAATACTCAAGGTGAGGTTGTTGTTGGGAGTCAAAGACTTCTCAGCTGCAATTTCTGAATCCGGATTTATCCTGAGGGAGGATGAAAATAATCTAGAT GCACTCCTGCTCCGAGGCCGTGCCTACTACTATCTAGCAGATCATGATGTTGCATCAAAGCATTACCAAAAAGGTCTTCGTCTTGATCCAGAGCACAGTG AGCTCAAGAAAGCATATTTTGGGTTAAAGAATTTACTGAAGAAGACTAAAAGTGCTGATGATAATGTAAACAAGAGTAAATGGCGAGTGGCAGTTGAGGA CTACAAAGCAGCACTAGCAATGGACCCTGATCATCTTGCACATAATGTCCATCTTCATCTGGGTTTGTGCAAGGTCCAGGTCAAACTTGGTAGGGGCAAG GATGCTCTAAGTAGTTGCAATGACGCACTTAGTATAGATGAAGATCTTATTGAAGCTTTGGTTCAGAGAGGAGAAGCTAAACTTCTAACAGAGGACTGGG AAGGAGCTGTTGAGGATCTGAAATCAGCTGCTCAACAATCACCTCAGGACAGGAACATACGTGAAGCCCTGATGCGGGCTGAGAAAGCTCTTAAGATGAG TAAACGCAAAGACTGGTACAAGATATTGGGAGTTTCCAAAACTGCTTCGATAGCTGAGATAAAGCGCGCGTACAAGAAACTTGCTTTGCAGTGGCACCCG GATAAGAATGTTGAGAATAGAGAAGAAGCGGAGAACAAGTTCCGTGAAATCGCAGCTGCCTACGAGGTCCTAGGAGACGACGAGAAGCGAGCAAGATTTG ACAGAGGAGAAGACATTGAAGACATGGGGATGGGCGGTGGAGGCGGTGGTTTTAACCCTTTTGGTGGCGGAGGTGGTGGCCAGCAATTCTCATTCCAGTT TGAAGGAGGCTTTCCGGGCGGGTTTGGCGGAGGGTTTCCTGGAGGAGGAGGCGGCGGTGATGGCTTTCAGTTCCACTTTTGA
AA sequence Show only first row Show all	>Lus10015078 pacid=23171543 polypeptide=Lus10015078 locus=Lus10015078.g ID=Lus10015078.BGIv1.0 annot-version=v1.0 MTNLIYSWARDVVAWRGLVYTIFILHFVFVCQILLLQPLVSASDSKTKTVAELFERVSQSVKLKRYSDALDDLNSAIEADPMLSEAYLRRASILRQICRY DESETNYQKVLELKPGHSAAEKELSQLNQAKNALDSALSHFSSGDHSKALEFVQKVVLVFSPACSKAKILKVRLLLGVKDFSAAISESGFILREDENNLD ALLLRGRAYYYLADHDVASKHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSADDNVNKSKWRVAVEDYKAALAMDPDHLAHNVHLHLGLCKVQVKLGRGK DALSSCNDALSIDEDLIEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDRNIREALMRAEKALKMSKRKDWYKILGVSKTASIAEIKRAYKKLALQWHP DKNVENREEAENKFREIAAAYEVLGDDEKRARFDRGEDIEDMGMGGGGGGFNPFGGGGGGQQFSFQFEGGFPGGFGGGFPGGGGGGDGFQFHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	0	1
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	1.0	0.9732
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015160 [exp]	1.4	0.9327
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	2.4	0.9243
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	4.0	0.9089
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	4.9	0.9028
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	6.5	0.9067
AT2G46170			Reticulon family protein (.1.2...		Lus10041080 [exp]	6.7	0.8901
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10033135 [exp]	7.7	0.8932
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	8.5	0.9010
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	12.5	0.8914

Compare expression of checked genes

Lus10015078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.