Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09770 366 / 2e-125 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 338 / 1e-115 RING/U-box superfamily protein (.1) AT5G03200 324 / 1e-109 RING/U-box superfamily protein (.1) AT5G19080 263 / 3e-85 RING/U-box superfamily protein (.1) AT3G06140 248 / 1e-79 RING/U-box superfamily protein (.1) AT2G35330 49 / 3e-06 RING/U-box superfamily protein (.1.2) AT2G21380 49 / 5e-06 Kinesin motor family protein (.1) AT3G23280 49 / 5e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT1G30860 48 / 8e-06 RING/U-box superfamily protein (.1) AT4G39050 48 / 9e-06 Kinesin motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023182 [exp] 561 / 0 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 330 / 9e-112 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 326 / 4e-110 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10034030 [exp] 270 / 1e-87 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10004419 [exp] 270 / 1e-87 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10010392 [exp] 47 / 6e-06 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10002487 [exp] 48 / 9e-06 AT5G01450 347 / 5e-115 RING/U-box superfamily protein (.1) Lus10008163 [exp] 47 / 1e-05 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10000533 [exp] 47 / 2e-05 AT1G54150 349 / 5e-119 E3 Ubiquitin ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128700 [exp] 433 / 3e-152 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 351 / 6e-120 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.008G202700 [exp] 276 / 3e-90 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 270 / 1e-87 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 259 / 3e-83 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 252 / 3e-80 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 52 / 6e-07 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.016G116300 [exp] 49 / 3e-06 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.003G156400 [exp] 49 / 5e-06 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G251900 [exp] 48 / 6e-06 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015080 pacid=23171506 polypeptide=Lus10015080 locus=Lus10015080.g ID=Lus10015080.BGIv1.0 annot-version=v1.0 ATGGGCAACATCAGCAGCAGTGGTGTCAACGGACGCCGGAGGCACGGTACTAGTCGCCGCAGCCACCCTCCACCTCAGCCCCCTCCTCCCGCTCCTCCTC AGCCGGAGATCACCGCCAATCGATACGTTTTCGCCGCCGCCACTCCCTATCCTCCCCCGTCCTCTCAGTTTCCTCCCAACCCTAACGGTCCTCCTCCGCC TCATCCTCCTTCCTACTACCACCAGTACCCTGGCTACTACCCGCCTCCTCCTCCCGCTATGCCGCTTCCGCTCCCGGCCCCATATGATCATCACCACCAC TACCGAGGCGCCGTCGATCATGCTCACTGGGTCGGCGGGAGGTACCCTTGCGGCCCGGTGGTTCAGCCGCCCACGCCTTATGTGGAGCACCAGAAGGCTG TCACCATTCGGAATGATGTCAATTTGAAGAAGGAGACGCTAAAGCTGGAGCCCGATGTGGAGAATCCTGGCACGTCTCTCGTCTCCTTCACCTTTGATGC CACTGTTGCTGGAAGCATCACCATTATCTTCTTTGCTAAAGAGGGTGAGAACTGTGTCCTAACACCAACAGATGAAGACAGTTTTCCAGCAGTGACGTTA AGTTTTGAGCAAGGTCTTGGTCAAAAGTTCAGGCAGGCATCCGGAACAGGGATCGACTTGTCAAAGTTGGATGAGGAGAAGTTAGTAAAGCAGGGGGAGA TTGACCTGTATCCTCTTGTGGTGAAGGCGGAGGCCAACGGATCAGATGGAAATGACACCATGCTTGGGAACTCGAATTCTCAGATAACTCAGGCAGTGTT TGAGAAGGAGAAAGGAGAGTATCATGTGAAGGTAGTGAAGCAGATTCTGTTTGTGAATGGAATGAGGTATGAGCTGCAGGAGATATACGGGATCGGGAAC ACTGTCGAAGGTGAAGTTGATGCGAATGACCCCGGTAAAGAATGTGTTATTTGCTTGTCCGAACCACGAGACACCACTGTTCTTCCTTGCCGGCACATGT GCATGTGCAGCGGCTGCGCCAAGGTGTTGAGGTTCCAAACGAATCGATGCCCGATTTGTAGACAGCCAGTGGAGAGGCTTTTAGAGATTAAAGTTAACAA TGCAGCAGACGAAGAATAA
AA sequence Show only first row Show all	>Lus10015080 pacid=23171506 polypeptide=Lus10015080 locus=Lus10015080.g ID=Lus10015080.BGIv1.0 annot-version=v1.0 MGNISSSGVNGRRRHGTSRRSHPPPQPPPPAPPQPEITANRYVFAAATPYPPPSSQFPPNPNGPPPPHPPSYYHQYPGYYPPPPPAMPLPLPAPYDHHHH YRGAVDHAHWVGGRYPCGPVVQPPTPYVEHQKAVTIRNDVNLKKETLKLEPDVENPGTSLVSFTFDATVAGSITIIFFAKEGENCVLTPTDEDSFPAVTL SFEQGLGQKFRQASGTGIDLSKLDEEKLVKQGEIDLYPLVVKAEANGSDGNDTMLGNSNSQITQAVFEKEKGEYHVKVVKQILFVNGMRYELQEIYGIGN TVEGEVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNAADEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	0	1
					Lus10034772 [exp]	4.5	0.8923
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10043444 [exp]	7.4	0.8759
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	7.9	0.9052
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028462 [exp]	7.9	0.8572
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	8.9	0.8789
AT3G55420			unknown protein		Lus10005165 [exp]	9.8	0.8854
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	10.5	0.8768
AT5G35090			unknown protein		Lus10019575 [exp]	12.5	0.8324
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	13.2	0.8804
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	16.9	0.8836

Compare expression of checked genes

Lus10015080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.