Plant FIBer expression Database

Lus10015082 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27830 44 / 6e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020544
[exp]
87 / 8e-22 AT2G27830 181 / 3e-58 unknown protein
Lus10009391
[exp]
86 / 2e-20 AT2G27830 130 / 7e-36 unknown protein
Lus10033121
[exp]
45 / 4e-06 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G188600
[exp]
49 / 1e-07 AT2G27830 160 / 5e-50 unknown protein
Potri.009G149200
[exp]
42 / 5e-05 AT2G27830 183 / 6e-59 unknown protein
PFAM info
Representative CDS sequence
>Lus10015082 pacid=23171508 polypeptide=Lus10015082 locus=Lus10015082.g ID=Lus10015082.BGIv1.0 annot-version=v1.0
ATGCCCTACATGCGACGGAACTTGGCGGTGGGATCGATCTTCGCTGCTTCCGATATCAGGCCGTTGAAGCTGACGAAGCTCCTCCTCAACGTTACCGTCC
AAAGAAGGGTCGGCGCCGTACGAGTTCTTGCGGCACCAGAATCTAGTGTCGGAGATCTAATCTTGATCGTCGTCCGTCAATACAGCAAGGATGGGCGCCG
GCCTCTACTCACTAAAGAAGCTATTGAATGGCTTGCTAGTCATGTTGGTATGCCACTGACTAAATTTGTTCGAGATGTGCTAGATGTGAAAGTACGTGTC
CTTCGGGATCCTGAAGTTCTACCTGTTGCTAAGATTCTTCTTGATGTTGGAGGTTGTAAGTGTACGATCCAGGTTGAATATCCTCAAGCAAGGCAATACA
AGAAAACTGGTGAATCTAAACGAAAGTGGGTGATGAAGGAGACGATTATTAACAAAGACGATTATTAA
AA sequence
>Lus10015082 pacid=23171508 polypeptide=Lus10015082 locus=Lus10015082.g ID=Lus10015082.BGIv1.0 annot-version=v1.0
MPYMRRNLAVGSIFAASDIRPLKLTKLLLNVTVQRRVGAVRVLAAPESSVGDLILIVVRQYSKDGRRPLLTKEAIEWLASHVGMPLTKFVRDVLDVKVRV
LRDPEVLPVAKILLDVGGCKCTIQVEYPQARQYKKTGESKRKWVMKETIINKDDY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G27830 unknown protein Lus10015082
[exp]
0 1
AT5G58510 unknown protein Lus10031851
[exp]
6.6 0.7088
AT1G21750 ATPDI5, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Lus10015305
[exp]
16.5 0.6951
AT2G41560 ACA4 "autoinhibited Ca\(2+\)-ATPase... Lus10031053
[exp]
19.0 0.7074
AT1G68050 ADO3, FKF1 "flavin-binding, kelch repeat,... Lus10013237
[exp]
19.6 0.7015
AT5G24310 ABIL3 ABL interactor-like protein 3 ... Lus10023052
[exp]
26.1 0.6503
AT1G71240 Plant protein of unknown funct... Lus10027905
[exp]
30.7 0.7042
AT4G25640 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, ... Lus10027504
[exp]
34.5 0.6602
AT2G34930 disease resistance family prot... Lus10002743
[exp]
35.9 0.6510
AT4G02250 Plant invertase/pectin methyle... Lus10008201
[exp]
36.1 0.6453
Lus10022149
[exp]
44.0 0.6669

Lus10015082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.