Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 357 / 2e-117 Plant protein of unknown function (DUF247) (.1) AT3G50150 84 / 4e-17 Plant protein of unknown function (DUF247) (.1) AT3G50160 79 / 3e-15 Plant protein of unknown function (DUF247) (.1) AT3G50140 78 / 5e-15 Plant protein of unknown function (DUF247) (.1) AT3G50170 72 / 3e-13 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 70 / 1e-12 Plant protein of unknown function (DUF247) (.1) AT2G28580 67 / 1e-11 Plant protein of unknown function (DUF247) (.1) AT2G36430 67 / 1e-11 Plant protein of unknown function (DUF247) (.1) AT4G31980 66 / 4e-11 unknown protein AT3G50130 64 / 2e-10 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023185 [exp] 942 / 0 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 177 / 4e-49 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 105 / 1e-23 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 105 / 2e-23 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 93 / 7e-20 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 90 / 7e-19 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 89 / 1e-18 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 86 / 2e-17 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 84 / 8e-17 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085300 [exp] 476 / 2e-163 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 452 / 5e-154 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 385 / 4e-128 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 375 / 6e-124 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 366 / 2e-120 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 358 / 2e-117 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 348 / 1e-113 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 290 / 6e-91 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.003G208400 [exp] 89 / 3e-19 AT5G11290 182 / 3e-55 Plant protein of unknown function (DUF247) (.1) Potri.003G208700 [exp] 89 / 7e-19 AT4G31980 276 / 5e-86 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10015084 pacid=23171523 polypeptide=Lus10015084 locus=Lus10015084.g ID=Lus10015084.BGIv1.0 annot-version=v1.0 ATGTCGTTCAAGCCAAATACGAATGACTTGAACGACCAACGATGGATAATCAACATTCGAGGATCCCTCGAAGAACACGACAACTTAGCTAAAACCAACC ACCTTGATGTTGAAGAAGAAGAAGAAGAAGAACTCCCTGCTCGAATATTCAACGTCCCAAAATCCCTTGTAGAATCACACCCTTACTCCTACACCCCTCA ACAAGTTGCCATCGGCCCTTACCATCACCATCGTCCCGAGCTCCATGATGCCTCCCGTCACAAGCATTCGTCCGCCAAGAGGCTGCAAAAACGATTACAG CCTCCTGTCAAGTATTGTGACATGGTGGACCAACTCACCAGTTTGGTCCCCAAGATTCGAGATTATTACCACAAGTACCTTGATTTTAGCGACGAGACCT TAGCATGGATGATGTCCATTGATGGGTCATTGCTCCTTGAGCTCCTTGGGGCGACCTTAGCAACCGCGGGTTCGAAGAACAATGTCATGGTGAGGGACGT TGTGATGCTCGAGAATCAGATTCCGATGATTGTGTTGAGCAAGATTTCGGAGGTTCAGTTTCGGTCCAAGGAGATTGGTGATGATCATCTTAAGAAAATG TTGGTTGGATTTTGGAAGGAGGTTTCGCCTTTTATGATGATGGATGATTTTGTAGGAGCTGATCAAATCTTGCACACTGCTCATCTTCTTGATTATTTGT ACGCAACGATTGTTCTTGATGAGGTAGTCAAGGAAGCACCAACAAGTACAGATAAAATAACATCATCAACAGAATTCGACGGCGGTGAAAGTTCATCAAG CGGAGGTCTCCATCTCATTACCACTAACAGCATTAGCAATAAGCTTACCTCCAAGCTAAACAAAGACATTTTGAAGAGACTTGTGCAGTCAAAGCCAGTT AAACTCTTCCTCAGATTACCATTCACAATTCTCTCCACAGTGTTACCGGGTTTCGCGATTCTTAAACACCCAATTGAGCATTTCCTCTTCGCATCACCAA CCCACAATAAACAAGATCCCTCCATGTCGAACAAATTTAACGAACTAGATCGACCTCCTTTACTAGAGGAGATCGCCATCCCATCAGTTGTTGAGCTAGT AAGCTCAGGTATCCGAATTGTGCCAACCACTGAGAGCAACAACATATTGAGCATTACCTTCGACGCCAAGGCATCAGAGCTGCATCTGCCGATAGTCAGA CTGGATATGAACACTGAGGTGGTGTTACGAAACTTGGTTGCGTACGAGGCCTCCATTGCAGAAGGCCGAGCACTCGTGCTCGCACGTTACACGGAGCTAA TGAACGGGATAGTGGACACGGGGGAGGATGTGAAGCTGTTGAGGGAGAGAGGTGTGGTGTTGAACCACTTGAAGAGCGACGATGAAGCAGCAGATTTCTG GAATGGAATGAGCAAGTCTGCGAGGCTTACAAAAGTTGGGTTTCTTGATGATGTGATTAGAGAGGTGAATGTGTACTATAATAGCCGGTGGAAGGTGAGG ATTGGGAAATTCTTGAGAAATTATGTGTTTGCTTCCTGGCAGTCGTTGACGCTATTCGCAGTTGTTTTGATCTTGGTGTTGATGGTATTCCAAGTATTCT GCTCGCTTTATAATTGGTATCGTATTCTTAGTACAGGAAGGGCTGTAAGGAGGATGGCTATGTAG
AA sequence Show only first row Show all	>Lus10015084 pacid=23171523 polypeptide=Lus10015084 locus=Lus10015084.g ID=Lus10015084.BGIv1.0 annot-version=v1.0 MSFKPNTNDLNDQRWIINIRGSLEEHDNLAKTNHLDVEEEEEEELPARIFNVPKSLVESHPYSYTPQQVAIGPYHHHRPELHDASRHKHSSAKRLQKRLQ PPVKYCDMVDQLTSLVPKIRDYYHKYLDFSDETLAWMMSIDGSLLLELLGATLATAGSKNNVMVRDVVMLENQIPMIVLSKISEVQFRSKEIGDDHLKKM LVGFWKEVSPFMMMDDFVGADQILHTAHLLDYLYATIVLDEVVKEAPTSTDKITSSTEFDGGESSSSGGLHLITTNSISNKLTSKLNKDILKRLVQSKPV KLFLRLPFTILSTVLPGFAILKHPIEHFLFASPTHNKQDPSMSNKFNELDRPPLLEEIAIPSVVELVSSGIRIVPTTESNNILSITFDAKASELHLPIVR LDMNTEVVLRNLVAYEASIAEGRALVLARYTELMNGIVDTGEDVKLLRERGVVLNHLKSDDEAADFWNGMSKSARLTKVGFLDDVIREVNVYYNSRWKVR IGKFLRNYVFASWQSLTLFAVVLILVLMVFQVFCSLYNWYRILSTGRAVRRMAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	0	1
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	1.0	0.8858
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	1.7	0.8192
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	3.5	0.8625
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	4.5	0.7975
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10011114 [exp]	4.5	0.7858
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10040741 [exp]	10.7	0.7133
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	10.9	0.7765
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	12.4	0.7137
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	12.7	0.7698
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	13.4	0.7811

Compare expression of checked genes

Lus10015084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.