Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03230 84 / 7e-21 Protein of unknown function, DUF584 (.1) AT2G28400 72 / 3e-16 Protein of unknown function, DUF584 (.1) AT5G60680 66 / 9e-14 Protein of unknown function, DUF584 (.1) AT3G45210 61 / 2e-12 Protein of unknown function, DUF584 (.1) AT1G11700 51 / 3e-08 Protein of unknown function, DUF584 (.1) AT1G61930 50 / 6e-08 Protein of unknown function, DUF584 (.1) AT4G04630 47 / 5e-07 Protein of unknown function, DUF584 (.1) AT4G21970 45 / 3e-06 Protein of unknown function, DUF584 (.1) AT4G21930 42 / 5e-05 Protein of unknown function, DUF584 (.1) AT3G15040 40 / 0.0004 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019936 [exp] 167 / 3e-53 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10026507 [exp] 157 / 6e-48 AT5G03230 97 / 1e-24 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 92 / 6e-24 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 80 / 5e-19 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 60 / 2e-11 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 52 / 4e-09 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 53 / 8e-09 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 51 / 2e-08 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 49 / 2e-07 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089900 [exp] 94 / 9e-25 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 91 / 3e-23 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 76 / 1e-17 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 72 / 5e-16 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 58 / 9e-11 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 54 / 3e-09 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 54 / 4e-09 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 54 / 5e-09 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 41 / 0.0001 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10015087 pacid=23171513 polypeptide=Lus10015087 locus=Lus10015087.g ID=Lus10015087.BGIv1.0 annot-version=v1.0 ATGGCAAGATTAGAGAATTTTTTCCGCGTCAACGTTTTCCCCGGCTCGGAGATCGACGACTCCGGCGGCGTTTTCGAATTCGACGAGTCCGACGTCGTCT GGAGCGGCGGCGACTCCGCCAACAAATATTGGACCAGTTCCAAGGCGGCATCCAATAGGAGATCTCCGTCCACCACAAGGTTCAGATCAGCCGGGCCGAC GGTGTCCACGAGCGCTTCACTGCCGGTGAACATACCGGACTGGTCGAAGATTTACAAGGAGGATTGCTACGGCGAGAGACGGCGGCGAGCGGAGATGAGA CTGGGCGAGCTAGCCGAGGACAGCGACTACGAGGATGAGTGGTCCGGCGGTGGGGGCGATTGGGAGGAGGAGAGAGTACCGCCGCACGAGTATTTGGCGC GGAGGAGAGGCGCGTCGCTGTCGGTGAATGAAGCGGCGGGGAGGACTCTGAAGGTGAGGAACGCGATTTGGAAGAAAGTGGGTTTCGAAGATTAA
AA sequence Show only first row Show all	>Lus10015087 pacid=23171513 polypeptide=Lus10015087 locus=Lus10015087.g ID=Lus10015087.BGIv1.0 annot-version=v1.0 MARLENFFRVNVFPGSEIDDSGGVFEFDESDVVWSGGDSANKYWTSSKAASNRRSPSTTRFRSAGPTVSTSASLPVNIPDWSKIYKEDCYGERRRRAEMR LGELAEDSDYEDEWSGGGGDWEEERVPPHEYLARRRGASLSVNEAAGRTLKVRNAIWKKVGFED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03230			Protein of unknown function, D...		Lus10015087 [exp]	0	1
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	1.4	0.9054
AT4G03420			Protein of unknown function (D...		Lus10018572 [exp]	8.7	0.8935
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028442 [exp]	10.7	0.8682
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	11.0	0.8999
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	12.1	0.9024
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	14.7	0.8977
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10004707 [exp]	16.4	0.8639
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037785 [exp]	16.7	0.8715
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	20.8	0.8911
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	23.2	0.8610

Compare expression of checked genes

Lus10015087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.