Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 486 / 4e-155 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G15200 478 / 6e-151 AFH3 formin 3 (.1.2) AT5G54650 480 / 5e-150 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G23140 462 / 4e-146 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G05200 461 / 1e-145 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23150 454 / 1e-143 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G21410 454 / 4e-143 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23160 471 / 6e-143 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G38830 442 / 7e-139 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23130 441 / 2e-138 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031579 [exp] 870 / 0 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031585 [exp] 776 / 0 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10039705 [exp] 614 / 0 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 569 / 0 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031582 [exp] 552 / 1e-180 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10027146 [exp] 534 / 1e-173 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015094 [exp] 531 / 2e-172 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015092 [exp] 517 / 6e-168 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031580 [exp] 517 / 1e-166 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 645 / 0 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.007G119900 [exp] 536 / 2e-171 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.004G025200 [exp] 521 / 2e-168 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 521 / 2e-168 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.001G416100 [exp] 513 / 1e-161 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G028400 [exp] 503 / 1e-161 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026350 [exp] 498 / 5e-160 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G131700 [exp] 502 / 2e-157 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.004G024404 [exp] 492 / 2e-157 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 489 / 2e-156 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal CL0016 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10015091 pacid=23149605 polypeptide=Lus10015091 locus=Lus10015091.g ID=Lus10015091.BGIv1.0 annot-version=v1.0 ATGAAGCAGCCACTCGAACGAAAAGCAGCTAACTTTCTCATCATTTCATGTCTGTTCCATGTAATCCACATGATAAATGCACAGTTTTTCAGGTGTGACA CGAATGTGAACTTCACATCCTTGAGTCCTTACCACCGTAGCCTGAACCAGACACTTGCATCGTTATCCGCAAACGCCTCGAAAACAGGCTACTTCACAAC CTCAACAACAAGCCAAGGCTCCGAAGAAGTCTCGTATGGACTCGTGCAATGTAGAGGCTACACATCACCAGAGGAATGCAATTCCTGTGCAAGCAACTTC TCCACCAGGATCACAGAGCTTTGCCCCAACCAAAAGGAGGCCTCCATATTCGACGATATATGCACGCTGCAGTATGCTGATTGGAACTTCTTCTCCACCG CCGATGCTCTCCCCCAGATTATGATGATGAGTTCGTTGAACTTATCGTACGTGGACTCTTTCAACGTTCAAATAAAGGGATTTCTCAAGAACATGTCGTC AATTGCTGCAACCAATCCTTCGAAGCTAGCGGTTGGGAGAAGTCGGTATAAGGATTTTCCGGATTTATATGGCATGGTGCAGTGTACAGTAGACATTTCT GCATCGGATTGCATGAACTGTCTTCAAGTAGTCTCGGACTATGTTCCAAAGATCTTAGGTGATGCTGCTGGCGGGAGACTGTTCGCTCTGAGTTGCAATC TTAGGTACGAGATGTATCCTTTCTTCGAATTGCAAATGCTTCGCCCTGCGTCTTCTCCATCGTTGCCGCCCAACTCGACATCCTCCACGGGGACTAATTC GACATTTAGCAACAAGTCCAAGATCAGAACTGTTACTTTGGTGGTCATATCTGTGTTAGCCTCCATTGCTGTGCTAGCTCTTGTCTGCACCGTTGTTTAC TGCTTCGTTCGTGTCCATTCTCCCGACATGATTCCAGATGGTTCGACAACGGATCGTGATGCGAGAGCTGAATCACTGATGATCAGCCTCAATGTGTTGA AAGAAGCAACTGGGAATTTTTCTGCAGAGAACAAACTAGGTGAAGGAGGTTTCGGTCCCGTTTACAAGGGGAAGTTGCCTGGTGGGCAAGAAATTGCTGT CAAGAGACTGTCAACCAGCTCGAAGCAAGGCCTCGAAGAGCTTAAAACAGAAGTGATGTTGGTAGCTAAACTTCTGCACAGGAACCTTGTAAGGTTGTTA GGATTCTGCCTCGAAGAAGACGAGAAGATTCTCGTGTATGAATATCTGCCTAATGGCAGCCTTGACAAAACTTTATATGATCCCAAAAGAAGATTTGATC TGGATTGGGGAACAAGATACAAGATCATAATCGGCATTGCTCGAGGGCTGTTATACCTGCATGAAGATTCACAGCTGAGGATCATCCACCGCGACTTGAA AGCCAGCAACATTCTATTAGACGAGTCCATGAGTCCCAAAATCTCCGATTTCGGGCTGGCCAGGCTCTTCCACGTAGGCGAAACACAAGAGATTACAAAT CAAATTGCAGGAACTTATGGCTACATGGCACCAGAGTATGCCCCACCCGGCCACTTTTCGGTCAAGTCTGATGTCTACAGCTTCGGTATCCTTCTGTTGG AGCTTGTGACAGGCCGGAGGAACAAGATTCGGAACTCCACGAACCTTCAAAGTCATGTGTGGGATCAATGGAGAAATGGAATGGCTCTAGAGGTGAGGGA TCCAACTATGGGGAACCGGTGCGCGAACGTGGAGGTGCTGAAGTGCATCCACATCGGGTTGCTATGTGTTCAAGAGTCGGTTTCGGATAGACCAACAATG TCGGAAATTGTGATGATGTTGAGCAGCCATACTGTCACCTATCCGACACCTTTGGAGCCTGCCTTCTTCATAAACAGAGGAGAAAGTTTCGAAGCCGAAG ACGATGATAATGATGATGATGATGATGATGAACACCAGAAGAATTCCAATGGAGATGAACTTGTTAAGTTCAAATCAGAACCACAATTGCAATTGTCTAT AAATGATGTAGAGAAGGCATGGAACCGCTGCAGGAAAGAGCTTGGGGATAATAAAGTTGTATTGGACGATTGTGGCTTGTTCAGTCTACTGGAATCAACC AGTGGATTGGAAGAATCTTCGTTGTTAGCAAGAAGAAACATGCAGAATGGGAAAAGGGAACTTGTACATTGCCTGAGGAAGAAGAATCTTCTCTCTGATG ATGAAGCTAGCAGCTCTACTTGGCTTATCGATTGCGTTGAGCTAGTTGTAGAACGGCCGACTACTCGTCATAGATATCTGGCTGGTGAGCTTGATGTCCA AGTCAAGGACGTATACCCTCCTGAAGCTGATGAATTAAGCCTTCATCAGCGTCGAGAACTTGGCTCAAAGAAGAAACATAAGAAGAAGTCAAAGGCAGAA AGGGAGAGGCAAACCATTATTGCTATTGCTGCAACAGCAGTAGCAACCTTCATGATCGTTTCGGTGCTCTTCTGCTGCTGGCTCTGCTTGAGGAACAATG AAGCTGACATTGGTTATGTTGAAGGCAAAAAAGATGAGAAGCCTCTTCTAAACTTGCGTGATTCTCTTGCAAGTTCCTCTCTGTCTGCAAGTCTGGCAAG CGCGAGTACTAGAGATCCAGTCCTTGAAAGCAACCTCTCTATGCATCCGGAAGCTAAAACTGTGGAGGGACAACCGCCAGAAATGATAACAAATGTAGGA GATGTGATTCCTCCTCTAAAACCTCCTCCGGGAAGACCGGTACCTGCACCTCCCGCAAAACCTGCACCTCCACCTGCACCAGCACCAGCACCAGCACCAG CTCCTGCGGCTGCACCTGCACCCCCTCCACCTCGTTCTGCTCCTCCACCGCCTCCCAAACCCCGTGCTCCACCCGCTCCATCCAGAAGGCCTGCACCTCC TGGACCAAAGAAGGGCAATAAGGGTGATGGGAGTGATGCCGATGGTACTGATGATGGAGCTCAAAAAGCCAAGCTGAAACCTTTCTTTTGGGATAAGGTT ATGGCCAGTCCTAATCAGTCCATGGTCTGGCATGAGATCAGTGGTGGATCTTTCCAGTTCGACGAGGAGATGATAGAGTCATTATTTGGCTATACGAATG CTAATAAAAATACCAATGAGCGAAGGAGAGATATAGCTGAAACTGCAGTTCAGTATATCCAGATCATCGATCCTAGGAAGGCTCAGAATCTGAATATACT TTTGAAAGCACTGAATGTTACTACGGAAGAAGTTCTTGATGCTCTGCGAGAAGCTAACGAGCTTCCAGTGGAGCTTCTACAAACTTTGCTGAAGATGGCA CCAACATCAGACGAGGAACTGAAGCTGAGGCTATATGCAGGCGAGCTTGCACAACTCGGCCCTGCAGAACGTTTCCTCAAAGCAGTTGTAGAAGTTCCAT TTGCTTTCAAGAGAGTCGAATCACTGCTGTTTATGAGTGTTCTTCAGGAAGAAGTTACAACACTCAAAGAATCCTTTGCGACTCTCGCGGTTGCTTGCAA CAAACTTAAGAACAGCAGGCTGTTCCTGAAACTATTAGAAGCAGTGCTCAAAACCGGTAACCGGATGAACGATGGCACATACCGCGGCGGTGCCCTAGCA TTCAAGCTCGACACACTCTTAAAACTTGCTGACGTGAAGGGAACCGACGGGAAGACAACCCTTCTGAACTTCGTCGTCATAGAAATCATCCGTTCGGAAG GCATACGAGCTGTACGAGAAGCAAAAGCAAGTGCAAGCGTCTCGAGCGTCGTGTCAGAGGATAGTCTCGGGGACGACACAAATGATGTGGCAGCAGAAGA GCACTATTGCAACCTCGGACTCCAAGTGGTTTCGAGCTTAAGCAGCGATTTCGAGGAAGTGAAGAAGGCTGCCGTGTTAGATTCCGAGATGCTTTCCTCA AGTCTGTCGAAACTCCGGGGATCCCTGACGAAGGCCAAGGCCTTCGTGCAATCCGACATGAAGAGCGATGAGGAGAGCGAGTTCTACATTTCGCTTGTGG CGTTCATGGACCGAGCAGACTCCGACATCACGTGGCTAACCGAGGAAGAGAAGAGGGTAACAGCTCTGATGAAGAGCACAGCCGATTACTTCCACGGGAA ATCAGGTAAGGAAGAAGGATCGAGGCTATTCACAATTGTTCGTAGCTTCTTGACCATGCTGGATAAGGCCTGCAAAGAAGTGCAGGAAGCTAGAGCCAAG AAACAACAGCAGGCTGCCAAAGGATCATTGTTGAAGAAGGATAACCCTGGCGAGCTGTCCTCGAAAAGTTCAGCGAGCTCGCAGCAACAGCAGCAGCATG ATAATCTTCATCATAAGCTGTTTCCAGCCATTGCTGAACGAAGGAATGGATCTTCGAGTTCGGATGATGATAGCTCTGATGATTATGATGATTAG
AA sequence Show only first row Show all	>Lus10015091 pacid=23149605 polypeptide=Lus10015091 locus=Lus10015091.g ID=Lus10015091.BGIv1.0 annot-version=v1.0 MKQPLERKAANFLIISCLFHVIHMINAQFFRCDTNVNFTSLSPYHRSLNQTLASLSANASKTGYFTTSTTSQGSEEVSYGLVQCRGYTSPEECNSCASNF STRITELCPNQKEASIFDDICTLQYADWNFFSTADALPQIMMMSSLNLSYVDSFNVQIKGFLKNMSSIAATNPSKLAVGRSRYKDFPDLYGMVQCTVDIS ASDCMNCLQVVSDYVPKILGDAAGGRLFALSCNLRYEMYPFFELQMLRPASSPSLPPNSTSSTGTNSTFSNKSKIRTVTLVVISVLASIAVLALVCTVVY CFVRVHSPDMIPDGSTTDRDARAESLMISLNVLKEATGNFSAENKLGEGGFGPVYKGKLPGGQEIAVKRLSTSSKQGLEELKTEVMLVAKLLHRNLVRLL GFCLEEDEKILVYEYLPNGSLDKTLYDPKRRFDLDWGTRYKIIIGIARGLLYLHEDSQLRIIHRDLKASNILLDESMSPKISDFGLARLFHVGETQEITN QIAGTYGYMAPEYAPPGHFSVKSDVYSFGILLLELVTGRRNKIRNSTNLQSHVWDQWRNGMALEVRDPTMGNRCANVEVLKCIHIGLLCVQESVSDRPTM SEIVMMLSSHTVTYPTPLEPAFFINRGESFEAEDDDNDDDDDDEHQKNSNGDELVKFKSEPQLQLSINDVEKAWNRCRKELGDNKVVLDDCGLFSLLEST SGLEESSLLARRNMQNGKRELVHCLRKKNLLSDDEASSSTWLIDCVELVVERPTTRHRYLAGELDVQVKDVYPPEADELSLHQRRELGSKKKHKKKSKAE RERQTIIAIAATAVATFMIVSVLFCCWLCLRNNEADIGYVEGKKDEKPLLNLRDSLASSSLSASLASASTRDPVLESNLSMHPEAKTVEGQPPEMITNVG DVIPPLKPPPGRPVPAPPAKPAPPPAPAPAPAPAPAAAPAPPPPRSAPPPPPKPRAPPAPSRRPAPPGPKKGNKGDGSDADGTDDGAQKAKLKPFFWDKV MASPNQSMVWHEISGGSFQFDEEMIESLFGYTNANKNTNERRRDIAETAVQYIQIIDPRKAQNLNILLKALNVTTEEVLDALREANELPVELLQTLLKMA PTSDEELKLRLYAGELAQLGPAERFLKAVVEVPFAFKRVESLLFMSVLQEEVTTLKESFATLAVACNKLKNSRLFLKLLEAVLKTGNRMNDGTYRGGALA FKLDTLLKLADVKGTDGKTTLLNFVVIEIIRSEGIRAVREAKASASVSSVVSEDSLGDDTNDVAAEEHYCNLGLQVVSSLSSDFEEVKKAAVLDSEMLSS SLSKLRGSLTKAKAFVQSDMKSDEESEFYISLVAFMDRADSDITWLTEEEKRVTALMKSTADYFHGKSGKEEGSRLFTIVRSFLTMLDKACKEVQEARAK KQQQAAKGSLLKKDNPGELSSKSSASSQQQQQHDNLHHKLFPAIAERRNGSSSSDDDSSDDYDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10015091 [exp]	0	1
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	6.9	0.7948
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	13.7	0.8024
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	15.3	0.7523
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	15.9	0.8099
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	17.3	0.7440
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	18.5	0.7087
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	20.0	0.7669
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	26.0	0.7287
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	37.0	0.7025
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	42.0	0.6852

Compare expression of checked genes

Lus10015091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.