Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21230 365 / 2e-118 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23200 364 / 8e-118 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G11490 357 / 3e-115 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1) AT4G23270 350 / 1e-112 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G00970 347 / 5e-111 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23150 339 / 3e-108 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23180 339 / 5e-108 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23230 332 / 2e-107 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23140 337 / 4e-107 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23260 335 / 1e-106 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031578 [exp] 978 / 0 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031582 [exp] 768 / 0 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015094 [exp] 587 / 0 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031580 [exp] 559 / 0 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 487 / 9e-157 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 410 / 2e-135 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 351 / 1e-112 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015096 [exp] 340 / 1e-109 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10033752 [exp] 333 / 1e-109 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 414 / 8e-137 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027900 [exp] 397 / 4e-131 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027600 [exp] 389 / 1e-128 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) Potri.004G025425 [exp] 372 / 6e-121 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 371 / 1e-120 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024632 [exp] 350 / 5e-116 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 352 / 5e-113 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 352 / 1e-112 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 351 / 1e-112 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026350 [exp] 350 / 2e-112 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10015092 pacid=23149559 polypeptide=Lus10015092 locus=Lus10015092.g ID=Lus10015092.BGIv1.0 annot-version=v1.0 ATGCAGCTTCATCTCCTGCATTTCAGTCTCCTTTTCATACTTTCATGGATTCATCATTCTCCCCGGGACGTCCAGGCTGCCACTGTAACGTGTCTGACCG ATACGAATTATACTTCGGGGAGTCAATACCAGCTGAACTTACAGATTGCCTTAACTTCCTTAGCTTCCAATGCTTCTCAGTCCGATTACATCCCTACTTC GGTTGGCCGGAGACCTGATTTGGTCTTCGCACAAGTCCAGTGTAGGGGGTACACTCCCAGGAATGCCTCCAAAGCCTGTGCAAGCAATCTGGCCGCTGAG ATCGTTCGAACGTGTCCTAACCAGAAGCGGAGTTCTATAGACAGTGAAAAGTGTTCTTTACAGTACTCGGACTTGGATTTCTTCTCGACCATGGACAGTG AGCCGCGTCTCTACAGGTATGATCATGGCGTTGGTGAAGCCGGTCGTGTTTCCTTGAGCAACAACCTGGAGAAGTTTCTCAAGTCTCTGTCGCCATACGC TGCAGCTAGTACTTCCAGGGTATATTCCGGGATGACTGTTGCTGATATCGAAGGTCCGAACATCTATGCTATGGTGCAATGCTCTAAAGCCATATCAGAA GGTTCCTGTGTAACTTGTCTCGACGACATTGCTACGAGGTATGTGGTTTTTTTGGACAATGAGGGCCAGGATGAAGCCGGTCTGTTAGTTGCTCAGAGTT GCAATCTTCGGGTCGATTTCTATCAGTTTTTCGCAGTCCCGCCACCGCCCTCCTCTCAGCCTTTACCCCCACCTCCACATCACTCGACAAACCATGTTGG AGATGGCAAGAGAAGTTTGGAGTTGCTGTTGATTGAATTCGATAAACTCAGACAAGCAACCGACAACTTTTCAGATGATAACAAGCTCGGACAAGGTGGA TTCGGTCCAGTTTACAAGGGGAAAATGCGGGATGGGCAAGAAATAGCTGTGAAAAGGCTATCGAGTAGCTCGAAGCAAGGTCTAGAAGAGCTCCAGACAG AAGTGATGTTTGTTGCTAAACTGATGCACCAGAATCTAGTGAGGCTGGTAGGATTCTGCATAGAAGAAGAAGAAAAGCTTCTTGTCTATGAGTACTTGCC TAACGGGAGTCTCGACAAGTTTCTTTTCGATCAGAAGAGAAGTGTGAAACTTACTTGGGAAATGAGGTACGATATCATTGTCGGGATCGCTAGAGGATTG TTGTACCTGCACGAGGAACACCCGCTAAAGATCATTCACCGTGATATGAAAGCCAGCAACATTTTGCTGGATGAGTCTATGACACCTAAAATTTCTGATT TCGGGCTGGCGAGACTGTTTCCTGGATCGAGAAATCACTGTTTTACCAATAGGATAATCGGCACCTATGGCTACATGGCTCCGGAGTATGCAGTTCGAGG GCGCTACTCAACTAAATCCGATGTCTATAGCTTTGGAATTCTGGTGTTGGAGATTATAACAGGTAGAAAGAACTCTAGTTTCCAGGACTCCAGGAATCTT CAAAGTTATGCATGGAGGCATTGGATTAATGGAACAGCCTTGAAGATACTGGACCCAACCATAGGCGAAGAATTTAAGAAAGATGAAGTCCTGAAGTGCA TTAACATAGGACTGTTGTCTGTCCAAGAAGCAGCCGATAAGAGACCGACAATGTCTGATGTCATTTTGAAGCTTGGAAGCTACACAAAGCTATGTCCACC TCCTTTACTAACCGGAATTCCGAATACTAAGAACATAAATGCACCAGATTCTTCAAATGAAGATTCTGAGGTTACTAGATCTAAAGAAGATAGCAATGCT TAA
AA sequence Show only first row Show all	>Lus10015092 pacid=23149559 polypeptide=Lus10015092 locus=Lus10015092.g ID=Lus10015092.BGIv1.0 annot-version=v1.0 MQLHLLHFSLLFILSWIHHSPRDVQAATVTCLTDTNYTSGSQYQLNLQIALTSLASNASQSDYIPTSVGRRPDLVFAQVQCRGYTPRNASKACASNLAAE IVRTCPNQKRSSIDSEKCSLQYSDLDFFSTMDSEPRLYRYDHGVGEAGRVSLSNNLEKFLKSLSPYAAASTSRVYSGMTVADIEGPNIYAMVQCSKAISE GSCVTCLDDIATRYVVFLDNEGQDEAGLLVAQSCNLRVDFYQFFAVPPPPSSQPLPPPPHHSTNHVGDGKRSLELLLIEFDKLRQATDNFSDDNKLGQGG FGPVYKGKMRDGQEIAVKRLSSSSKQGLEELQTEVMFVAKLMHQNLVRLVGFCIEEEEKLLVYEYLPNGSLDKFLFDQKRSVKLTWEMRYDIIVGIARGL LYLHEEHPLKIIHRDMKASNILLDESMTPKISDFGLARLFPGSRNHCFTNRIIGTYGYMAPEYAVRGRYSTKSDVYSFGILVLEIITGRKNSSFQDSRNL QSYAWRHWINGTALKILDPTIGEEFKKDEVLKCINIGLLSVQEAADKRPTMSDVILKLGSYTKLCPPPLLTGIPNTKNINAPDSSNEDSEVTRSKEDSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	2.6	0.9820
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	3.7	0.9820
					Lus10000380 [exp]	4.6	0.9820
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	4.9	0.9473
					Lus10010383 [exp]	5.3	0.9820
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	5.9	0.9813
					Lus10009632 [exp]	6.5	0.9790
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10009250 [exp]	6.5	0.8843
AT3G10460			Plant self-incompatibility pro...		Lus10016165 [exp]	6.7	0.8797
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	7.0	0.9671

Compare expression of checked genes

Lus10015092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.