Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 391 / 4e-127 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21410 380 / 7e-123 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23180 380 / 9e-123 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23160 390 / 4e-121 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G21230 374 / 1e-120 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G23140 374 / 1e-120 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23270 373 / 2e-120 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23130 365 / 4e-117 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23190 362 / 4e-116 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT3G45860 362 / 1e-115 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031580 [exp] 1030 / 0 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 808 / 0 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015092 [exp] 586 / 0 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031578 [exp] 566 / 0 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 492 / 6e-158 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 461 / 2e-154 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 450 / 4e-150 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018382 [exp] 405 / 2e-132 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10015096 [exp] 391 / 2e-128 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 525 / 6e-179 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 427 / 3e-141 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 421 / 2e-138 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026100 [exp] 419 / 9e-138 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 405 / 1e-132 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 400 / 7e-131 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 400 / 1e-130 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024228 [exp] 399 / 2e-130 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026350 [exp] 399 / 2e-130 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024800 [exp] 399 / 3e-130 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10015094 pacid=23149530 polypeptide=Lus10015094 locus=Lus10015094.g ID=Lus10015094.BGIv1.0 annot-version=v1.0 ATGCAGCTCATTGTCTTACCTTTAATGTTCTTCTTCTTACTTTCAGGGATTCATCAGCAAGTCCGAGCTTCCACCATAATGTGTCCGATCAACACGAACT ACACTTCTGGAAGTCAATACCAGCTGAACCTAAACCTCACCTTAGCTTCCTTAGCCAACATTGCCTCTGTGTCCGACTACTTCACTACTTCCATCGGCCA GACCCCCAATGTGGTCTACGGACTCGTTCAGTGCACCGGTTACACTCCCAGGGACGCCTGCCAAGCTTGTGCAAGCAATATGGCTACCGAGATCATCCAA ACATGTCCTAATCAGAAACAAGGTTCTGCTTACGTGGACGAGTGTTCTTTGCACTACTCGGACCAGAATTTCTTCTCGATCATGGACAGCGAGCCACTTT ATTTCAAGTGGAAGAATAATACTGATGCTAATAATGCAACATCGGATTTTGTTCTGTTAAGGAGCAACGTGGAGAAGTTGCTTAATTCTCTGTCACCGTC TGCTGCAGTTAATCCTTCCAGGATTTGTTTTGGTATTTATGGTACGAAAGGTCGAAAAATCTACGCTATGGTGCAATGCTCTAAGGGTATATCGGTGAAT GGCTGCTTAACTTGTCTTGAGAGAATTACAGTGAGCTATATGTTTTACAGTAAAGCTGGCTTGTTAGTTGCTCGGAGTTGCAATTTGCGAGTCGATACCT ATCAATTTCTCGAGGTTTCACCCCCGGCTCAACCTAGACCGAGTATATCCGTTGGTGCACCACCTCCTTCATCAGCAGCGCCATCAGGAAGAAACCAATC GACAAGCGACGGTTCTTCTTCATTAGTGCCCTCAGGAACAAGGAAGAAGAACTCCAAGATTATGATAACGTTGGTCATTTCTGCAGTAGCTTTTGCTTTG GTGGTGATAACTGGTATCTATAGCGTCTTACTTTGGCGGAATCAAATGAGGAATAGAGTTGTATCATTAAATTCATTGAAGATGTTACGAGTCGGAGGGA GCAACAGAAGTTTGGAGTCACTATTGATTGAATTTGGAAAACTCAGAGAAGCAACCAACAAATTTTCAGATGAAAACAAGCTTGGACAAGGCGGTTTCGG TCCAGTTTATAAGGGGAAAATGCGGGATGGGCAAGAAATAGCTGTGAAAAGGCTATCGAGTAGCTCGAAGCAGGGTCTAGAAGAGCTCGAGACAGAAGTA ATTTTTGTTGCTAAACTGATGCACCAGAATTTGGTGAGGCTCGTAGGCTTCTGCATTGAAGAAGAAGAAAAGCTTCTTGTCTATGAGTACTTGCCTAATG GAAGTCTGGACAAATTTCTATTCGATCAGAAGAGAAGTGTGAAACTCACTTGGGAAATGAGGTACAATATCATTGTCGGGATCGCGAGAGGATTGCTGTA CTTGCACGAGGAATACCCGCTAAAGATTGTTCATCGTGATATGAAAGCCAGCAACATTTTGCTAGATGAGTCCATGACACCTAAGATTTCTGATTTCGGG TTGGCACGGCTCTTTCCCGGAACTCAGAATCACTGTTTTACCAACAGGATAATCGGAACATATGGTTACATGGCACCGGAGTATGCAGTGAGAGGGCGCT ACTCGACTAAATCTGATGTCTATAGCTTTGGCATTCTGGTCTTGGAGATTGTAACAGGTAGAAAGAACTCTAGTTTCGAAGACTCGAGGAATCTTCAAAG TTATGCATGGAAGCATTGGATTGATGGAACTGCGTTGAAAATATTGGATCCAATCTTAGGTGAAGAATTTAAGAAAGATGAAGTCCTGAAGTGCATTAAC GTAGGACTGCTGTCTGTCCAAGAAGTAGCCGAGAAGAGACCGACGATGTCTGATGTCATTTCGAAGCTTGGAAGCTACACAAAGCTACGTCCATCTCCTT TACTAACTGTTGGAAATTTAAATACTAAAAACTTTACTGCTTTTGATTCTTCAAATGAAGATTCTCATTTCACTGGATCTAACCAAGATAGCATTGCTTA A
AA sequence Show only first row Show all	>Lus10015094 pacid=23149530 polypeptide=Lus10015094 locus=Lus10015094.g ID=Lus10015094.BGIv1.0 annot-version=v1.0 MQLIVLPLMFFFLLSGIHQQVRASTIMCPINTNYTSGSQYQLNLNLTLASLANIASVSDYFTTSIGQTPNVVYGLVQCTGYTPRDACQACASNMATEIIQ TCPNQKQGSAYVDECSLHYSDQNFFSIMDSEPLYFKWKNNTDANNATSDFVLLRSNVEKLLNSLSPSAAVNPSRICFGIYGTKGRKIYAMVQCSKGISVN GCLTCLERITVSYMFYSKAGLLVARSCNLRVDTYQFLEVSPPAQPRPSISVGAPPPSSAAPSGRNQSTSDGSSSLVPSGTRKKNSKIMITLVISAVAFAL VVITGIYSVLLWRNQMRNRVVSLNSLKMLRVGGSNRSLESLLIEFGKLREATNKFSDENKLGQGGFGPVYKGKMRDGQEIAVKRLSSSSKQGLEELETEV IFVAKLMHQNLVRLVGFCIEEEEKLLVYEYLPNGSLDKFLFDQKRSVKLTWEMRYNIIVGIARGLLYLHEEYPLKIVHRDMKASNILLDESMTPKISDFG LARLFPGTQNHCFTNRIIGTYGYMAPEYAVRGRYSTKSDVYSFGILVLEIVTGRKNSSFEDSRNLQSYAWKHWIDGTALKILDPILGEEFKKDEVLKCIN VGLLSVQEVAEKRPTMSDVISKLGSYTKLRPSPLLTVGNLNTKNFTAFDSSNEDSHFTGSNQDSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015094 [exp]	0	1
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041033 [exp]	4.6	0.7221
					Lus10017802 [exp]	5.8	0.7270
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	7.7	0.7216
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	12.6	0.7540
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	14.0	0.7102
AT2G42040			unknown protein		Lus10021062 [exp]	26.3	0.6329
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009003 [exp]	32.2	0.7192
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10019539 [exp]	34.2	0.5632
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021019 [exp]	36.3	0.7103
AT1G07645		ATDSI-1VOC	dessication-induced 1VOC super...		Lus10016574 [exp]	40.4	0.6424

Compare expression of checked genes

Lus10015094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.