Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 202 / 7e-57 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 198 / 2e-55 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23160 190 / 3e-51 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23130 181 / 5e-49 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23280 179 / 1e-48 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G21410 177 / 9e-48 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G38830 175 / 4e-47 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23140 172 / 8e-46 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23150 171 / 1e-45 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G21230 168 / 1e-44 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031581 [exp] 973 / 0 AT4G23310 213 / 2e-60 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10015091 [exp] 484 / 4e-156 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 440 / 3e-147 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015096 [exp] 377 / 5e-124 AT4G05200 234 / 7e-69 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031582 [exp] 269 / 1e-81 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007634 [exp] 268 / 2e-81 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015094 [exp] 258 / 4e-77 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 253 / 2e-75 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007631 [exp] 249 / 1e-74 AT4G23180 257 / 1e-76 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 329 / 3e-104 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 225 / 3e-65 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025425 [exp] 224 / 5e-65 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026100 [exp] 223 / 3e-64 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 214 / 4e-61 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G029300 [exp] 208 / 6e-59 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030212 [exp] 207 / 7e-59 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 204 / 3e-57 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026350 [exp] 203 / 4e-57 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030300 [exp] 203 / 4e-57 AT4G21410 533 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10015095 pacid=23149528 polypeptide=Lus10015095 locus=Lus10015095.g ID=Lus10015095.BGIv1.0 annot-version=v1.0 ATGTTTTTTCACTTGCTCTTCATTGCATGCCTTTTTCATGCAATTCATCTGACAAGTGCACAACTTGCTTACATCTGCGGTGTCACCACGAACTACACTT CCCCGAGTCCTTACAGCCGAAACCTAAACCTGACCCTCTCATTCTTATCAGCAAACGCCTCGAAAACTGGATACTTCACTACCGCAACAGGCAATGATGG CTCCGAGGAGGTTTCCTACGGACTCGTACAATGTAGAGGCTACGCTTCATCAGAAGCCTGCAAAGCCTGTGCAAACACGCTATCCGCTCAAATCACAAAC TTCTGTCCAAACCAAACGGAAGCTTCCATATTCAACGAGAACTGTACACTGCAGTATGCTGATTGGAACTTCTTCTCTACAGTTGATGCCACCCCCTACG TTACTATGGTTAGTACAGAAAATGTAAGCTACCAGGACGCTTTCAACGTTCAATTACAAGGACTTCTCAAGAATCTTTCGTCGGAGGCTGCAAGTGATTC TGCAAAGCTTGCTGTTGGGAGAGATAGATATAAATCTCTTGAGTACGTTTATGCCATGGTGCAGTGTGTACTAGACGTTTCTGTATCTGATTGCCGGAAC TGTCTTCAAGTGATTTCCAGCTATGTTCCGCGTTTCATGGCTGATAGAGATGGCGGGAGATTGTTCGCTTTGAGTTGCAATCTCAGGTACGAGACGAGTT CCTTCTTTCAGTTGCCAATTTCGCCACCACCTGCAAGCGCTTCTACGCTTCCTCCTCCATTGATCCAACCCAACTCCACCTCTGTTGGAACGAATTCGAC TGATGGTTATGGAAAGAAGTCCAAGAGCAGAAGTGTTACTATGGTGGTCATACCTGTGTTGGCTTCTCTGGCTGTGCTAGCTCTTGCCTGTTCCACTGCT TATTACTTCCTTCATGTCCGTGCTTCGGCCATAAGTCCTGTTGTAAAAATAGGGGGCTCTACAGAAGATGGTGATGCAAGAGCTGAATCACTTATGATCA GCCTCAATGTGCTCAAAGTGGCAACACAGGGTTTTTCTTCTGAAAGCAAATTAGGTGAAGGCAGCTTTGGTCCAGTTTACAAGGGGAAGCTGCCTAGTGG GCAAGAAATTGCTGTTAAGAGACTGTCGACCGGCTCAAGGCTAGGCCTAGAAGAGCTCAAAACAGAAGTGATGTTGATTGCTAAACTTCTGCATACCAAC CTTGTAAGGCTGTTAGGATTCTGCCTCGAAGAAGACGAGAAGATTCTCGTTGGCTACATGGCGCCCGAGTATGCTAGACACGACCACTTCTCAGTCAAGT CCGATGTCTACAGCTTTGGCATCTTGATATTGGAGATTGTAACAGGCCGAAAAAACAACTCCAGGATCCGGAACTCCATCAATCTTCAAAGCCATGTATG GGATCAATGGAGCAATGGGATGGCTGTAGAGTTGAGAGATCCAGCCATGGGGGACCAATTTGCAAACATGGAGGTGTTGAAGTGCATACACATCGGGTTG CTATGCGTTCAAGAATCTGTTGTCAATAGACCGACAATGTCTGAAGTTGTAATGATGCTCAGCAGCCATACTGTCACCTATTCAACGCCTTTACGGCCAG CTTTTTTCATCAATAGAGAAGAAGGGAGTTCTCAAGCAGATGATGATGATGATGATTATAAGAGATATTCCACCGGAAATGAACTAGTTCTTTTCAACTC CGAACCTTTGCAACTGTCTATAAATGATGTCTCCATCACAGATCTATACCCGCGTTGA
AA sequence Show only first row Show all	>Lus10015095 pacid=23149528 polypeptide=Lus10015095 locus=Lus10015095.g ID=Lus10015095.BGIv1.0 annot-version=v1.0 MFFHLLFIACLFHAIHLTSAQLAYICGVTTNYTSPSPYSRNLNLTLSFLSANASKTGYFTTATGNDGSEEVSYGLVQCRGYASSEACKACANTLSAQITN FCPNQTEASIFNENCTLQYADWNFFSTVDATPYVTMVSTENVSYQDAFNVQLQGLLKNLSSEAASDSAKLAVGRDRYKSLEYVYAMVQCVLDVSVSDCRN CLQVISSYVPRFMADRDGGRLFALSCNLRYETSSFFQLPISPPPASASTLPPPLIQPNSTSVGTNSTDGYGKKSKSRSVTMVVIPVLASLAVLALACSTA YYFLHVRASAISPVVKIGGSTEDGDARAESLMISLNVLKVATQGFSSESKLGEGSFGPVYKGKLPSGQEIAVKRLSTGSRLGLEELKTEVMLIAKLLHTN LVRLLGFCLEEDEKILVGYMAPEYARHDHFSVKSDVYSFGILILEIVTGRKNNSRIRNSINLQSHVWDQWSNGMAVELRDPAMGDQFANMEVLKCIHIGL LCVQESVVNRPTMSEVVMMLSSHTVTYSTPLRPAFFINREEGSSQADDDDDDYKRYSTGNELVLFNSEPLQLSINDVSITDLYPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10015095 [exp]	0	1
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	5.6	0.6721
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015093 [exp]	7.2	0.6584
					Lus10005843 [exp]	11.1	0.6509
					Lus10022511 [exp]	12.8	0.6509
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	14.3	0.6509
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	15.7	0.6509
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	16.9	0.6509
					Lus10010526 [exp]	16.9	0.6498
					Lus10010827 [exp]	18.1	0.6509
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	19.2	0.6509

Compare expression of checked genes

Lus10015095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.