Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 202 / 1e-56 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23220 179 / 3e-48 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G23180 177 / 5e-48 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT3G45860 176 / 1e-47 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23160 171 / 4e-45 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23270 167 / 1e-44 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23190 166 / 5e-44 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G04570 164 / 5e-44 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2) AT4G23140 166 / 7e-44 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G04540 163 / 5e-43 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031582 [exp] 523 / 2e-180 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 422 / 3e-140 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015094 [exp] 395 / 4e-130 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015095 [exp] 355 / 1e-115 AT4G23310 220 / 4e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10031581 [exp] 352 / 3e-114 AT4G23310 213 / 2e-60 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1) Lus10031578 [exp] 336 / 5e-108 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015092 [exp] 325 / 8e-104 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007631 [exp] 263 / 4e-80 AT4G23180 257 / 1e-76 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015091 [exp] 261 / 3e-75 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120900 [exp] 269 / 1e-81 AT4G23180 454 / 3e-151 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 206 / 2e-58 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G023964 [exp] 204 / 6e-58 AT4G23180 401 / 6e-132 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025425 [exp] 203 / 2e-57 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G023788 [exp] 198 / 2e-55 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 197 / 4e-55 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028600 [exp] 196 / 1e-54 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024101 [exp] 194 / 5e-54 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 192 / 2e-53 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 189 / 3e-52 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10015096 pacid=23149573 polypeptide=Lus10015096 locus=Lus10015096.g ID=Lus10015096.BGIv1.0 annot-version=v1.0 ATGCAGCATCTTATCTTACATTTCTTGTTGTTCCTCTTACTTTCGTGTATCAGTTATTTCCCCCAGCACATCCAAGGATTCACAACACTCTGTGTGAACG ACAGGAATTACACATCTAGAGATCCATTTCAGCTGAACCTAAAACTCACCTTAACTTCCTTAGCCACCAACGCCTCTCTCCATGGCTACTTCACTACCTA CATCGGTCAGAGCCCCGATACGGTCTACGGGCTCGTACAATGTAGTGGCTATACTCCCGCAGACAACTGCCGAGTTTGTGCAAACTACATGGCCATCAAG ATTCTTCAATCCTGTCTTAACCAGAAGCAAGGTTCTATATACACTGATGAGTGTTCTTTGCAGTACTCGGACCAGAATTTCTTCTCGACTATGGACAGCC GTCCGATTTTCTACCTGTCGGGTACTAAAAACGCAACGGATATTGCTCTCTTGGGGAGCAATTTGGAGAAGCTTCTTGAATCAATGGCACCTTCTGCTGC GGATAGCACTTCGAGGATATATTCCGGGATGGCTCCTTATATCGATGGTCAGAACATCTATGCTATGTTGCAGTGCTCTAGAGGGATATCGGGAAGTGAC TGCTTGACTTGTCTCCGGAATATTACGACCAGCTTTATGGTTTATCTGTACCGGGAGGAGCCAAGCGAAGGCGGTTCGTTGGTTGCTCCGAGTTGTAATT TGCGGTTCGATACCTATCAGTTCTTCTCGGTTTTATCTCAACCTGGATCGAATCAACCTCCACCTCCTCCTGCATTTGTCCCATCAGAGTCTGAATTAGT CACATCAGATTCAGAAGGAACAGGGAAAACCTCCAAGATCATGATTATGCTGGTTATGGCTTTTGCTTTCGCTTTGATACTGATAACTGGTATCTACAGC TCCTTAGTTTGGAGGAATCGCATGAGGAACAAAGTTGGTAATTTAGCTCAAACTTCTTTGAGAGGCTACTTTGGGTCTGACATAGAAGCAACCAACAACT TTTCAGACAAAAACAAGCTTGGACAAGGTGGCTTTGGTCCAGTGTATAAGGGGAAAATGCTAAATGGGCAATACATAGCCGTGAAAAGGCTATCAACTAG CTCGAAGCAGGGTCTAGAAGAGCTCGAAACAGAAGTGACGTTGGTTGCCAAACTAATGCACCAGAATCTAGTTAGGCTTGTAGGATTCTGCATAGAAGAA GACGAAAAGCTTCTTGTCTATGAATACCTGCCTAATGGGAGTCTGGACAATGGCTACATGGCACCAGAATATGCAGTTCGAGGGCGCTACTCAACTAAAT CTGACGTATATAGCTTTGGAATTCTGGTCTTGGAGATCATAACAGGTAGAAAGAACTCTAGCTTCCAGGATTCCAGGAATCTTCAAAGTTATGCATGGAA GCATTGGATTAATGGAACAGCCTTGAAGATACTGGACCCAGGCATAGGTGAAGAGTTTAACAAAGATGAAGTCCTGAAGTGCATTAACATAGGACTGCTG TCTGTTCAAGAAGCAGCAGAGAAGAGACCAACAATGTCTGATGTCATTTTGAAGCTTGGAAGCTACACAAAGCTATGTCCTTCTCCTTTACTAACCGGAA TCTCAAATGCTAAGAACACAACTCCTCCAGATTCTTCAAATAAATTTTCCGACGTCACCGGATCTAACGTAGATGATATTGCTTAA
AA sequence Show only first row Show all	>Lus10015096 pacid=23149573 polypeptide=Lus10015096 locus=Lus10015096.g ID=Lus10015096.BGIv1.0 annot-version=v1.0 MQHLILHFLLFLLLSCISYFPQHIQGFTTLCVNDRNYTSRDPFQLNLKLTLTSLATNASLHGYFTTYIGQSPDTVYGLVQCSGYTPADNCRVCANYMAIK ILQSCLNQKQGSIYTDECSLQYSDQNFFSTMDSRPIFYLSGTKNATDIALLGSNLEKLLESMAPSAADSTSRIYSGMAPYIDGQNIYAMLQCSRGISGSD CLTCLRNITTSFMVYLYREEPSEGGSLVAPSCNLRFDTYQFFSVLSQPGSNQPPPPPAFVPSESELVTSDSEGTGKTSKIMIMLVMAFAFALILITGIYS SLVWRNRMRNKVGNLAQTSLRGYFGSDIEATNNFSDKNKLGQGGFGPVYKGKMLNGQYIAVKRLSTSSKQGLEELETEVTLVAKLMHQNLVRLVGFCIEE DEKLLVYEYLPNGSLDNGYMAPEYAVRGRYSTKSDVYSFGILVLEIITGRKNSSFQDSRNLQSYAWKHWINGTALKILDPGIGEEFNKDEVLKCINIGLL SVQEAAEKRPTMSDVILKLGSYTKLCPSPLLTGISNAKNTTPPDSSNKFSDVTGSNVDDIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10015096 [exp]	0	1
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	10.9	0.7076
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	18.4	0.7057
AT1G30845			unknown protein		Lus10023982 [exp]	20.9	0.6597
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	21.1	0.6934
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10010569 [exp]	28.5	0.6534
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	29.3	0.6592
AT2G35900			unknown protein		Lus10021249 [exp]	33.8	0.6793
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	45.5	0.6439
AT2G18540			RmlC-like cupins superfamily p...		Lus10037937 [exp]	46.2	0.6031
					Lus10009043 [exp]	46.3	0.6321

Compare expression of checked genes

Lus10015096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.