Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21880 243 / 1e-77 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 218 / 2e-68 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT5G48250 189 / 8e-57 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT3G07650 181 / 1e-53 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT1G68190 107 / 5e-26 CO B-box zinc finger family protein (.1) AT2G33500 99 / 8e-23 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 99 / 2e-22 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 92 / 3e-21 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT2G24790 72 / 6e-14 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G24930 72 / 1e-13 CO COL4, ATCOL4 CONSTANS-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031584 [exp] 580 / 0 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10039695 [exp] 251 / 5e-80 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10036419 [exp] 153 / 1e-42 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 110 / 2e-27 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 102 / 3e-24 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10002578 [exp] 99 / 2e-22 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 94 / 3e-21 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10034625 [exp] 94 / 1e-20 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10001806 [exp] 92 / 3e-20 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121200 [exp] 340 / 1e-114 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.017G039301 [exp] 332 / 1e-111 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.014G170600 [exp] 186 / 6e-55 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 160 / 4e-45 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 100 / 4e-23 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.001G061800 [exp] 98 / 4e-22 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 97 / 7e-22 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.014G134601 [exp] 92 / 9e-21 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 87 / 8e-19 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 85 / 7e-18 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10015098 pacid=23149597 polypeptide=Lus10015098 locus=Lus10015098.g ID=Lus10015098.BGIv1.0 annot-version=v1.0 ATGGAACCTTTATGTGAGTTTTGTAATGTGGTGAACGCAGTGGTGTACTGCAAATCAGATTTGGCTAGATTATGTCTGCAGTGCGATGGATTGGTACATT CTGCCAACTCGTTGTCCCGTAGGCATCAGCGTTCGCTCCTCTGCGATAAGTGTAATTCGCAGCCTGCATCAGCGATGTGTTTGGATGAGAAGCTTTCGGT GTGTCAATGGTGTGACTGTAGTAGTGCTAATGGGTGCTCAAGCTTGGGGCATAGGCTACATGTCTTGAATTACTACACAGGGTGCCCTTCCTCGTCGGAG TTCATGGGACTATGGTCCTCTGTTCTCGAGTTCCCTACGTTGTCCGTGACTAGTTGTCTGGACGAAAGAGCCAACGAGCCTTGGATGGAACCTCCTCCTC CGATGATTCCACCGAATGTGAGTTACATATCTTACGACAGAGATCAAGCACCGTTCCCAACAGTTGAATCTGACCTGCCAAAGGGTTGTTCAGTTGTCGA AGATCTTGGGCTCTGTGATCATGAATATCTCTGTGAAGGTCACAATATTGAAGATGTTCAGCTGAGTTTGGAACACAGTGATGAGATATTCGGATTTGAA GATGTTGGAAAAGAGTGCAGCACCATCGAAAGCAACTTGTCATTCAAAGAATCCAAGATCGGTTTGATTGAAAATGTGATAGAGCCATCTCATGTTGCGG GGTTGAATAATTTAATGCCGGCTGTAAGTGGAGGTACTACTAATTACTTTTATATGAACCCTAATTGCAATAGAAACATCAGCAGCCTAGGATTTCCCAG TGGGACTGCTGCCAAAGTTCATTCAAGCATTTCTCTCTCGATGTCCGGTGAAAGTAGTGTTGCTGATTACCAAGATTGTGTGCTGTCACCAGCGTTTCTA AGTGATAAGTCGCCATGGGAGTCGAATACCGGTGGCTCACAGGCTAGGTTCTTGGCGAAGATGCGATACATGGAGAAGAAGAGGACACGCTCGTTTGGGA AGCAAATAAGATATGCCTCTCGTAAAGAGAGGGCTGATACGAGGAAACGTGTCAAGGGAAGATTCGTAAAAGCTGGTGAAGCATTTGACTACGGCTCTCT TCCTACAAGCGACTTCTGA
AA sequence Show only first row Show all	>Lus10015098 pacid=23149597 polypeptide=Lus10015098 locus=Lus10015098.g ID=Lus10015098.BGIv1.0 annot-version=v1.0 MEPLCEFCNVVNAVVYCKSDLARLCLQCDGLVHSANSLSRRHQRSLLCDKCNSQPASAMCLDEKLSVCQWCDCSSANGCSSLGHRLHVLNYYTGCPSSSE FMGLWSSVLEFPTLSVTSCLDERANEPWMEPPPPMIPPNVSYISYDRDQAPFPTVESDLPKGCSVVEDLGLCDHEYLCEGHNIEDVQLSLEHSDEIFGFE DVGKECSTIESNLSFKESKIGLIENVIEPSHVAGLNNLMPAVSGGTTNYFYMNPNCNRNISSLGFPSGTAAKVHSSISLSMSGESSVADYQDCVLSPAFL SDKSPWESNTGGSQARFLAKMRYMEKKRTRSFGKQIRYASRKERADTRKRVKGRFVKAGEAFDYGSLPTSDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21880	CO	COL12	B-box type zinc finger protein...		Lus10015098 [exp]	0	1
AT3G50150			Plant protein of unknown funct...		Lus10039777 [exp]	47.9	0.7381
AT3G09280			unknown protein		Lus10021099 [exp]	70.6	0.7410
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007283 [exp]	71.6	0.7059
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005412 [exp]	80.0	0.7179
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	104.1	0.7330
					Lus10037199 [exp]	107.5	0.6624
AT5G03310			SAUR-like auxin-responsive pro...		Lus10037990 [exp]	112.4	0.7312
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10003740 [exp]	205.3	0.6709

Compare expression of checked genes

Lus10015098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.