Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35730 497 / 1e-174 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G32295 370 / 1e-124 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 84 / 7e-17 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 81 / 4e-16 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 78 / 4e-15 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 74 / 7e-14 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 71 / 6e-13 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 70 / 2e-12 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT2G03240 66 / 4e-11 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 63 / 2e-10 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039696 [exp] 516 / 0 AT5G35730 689 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10027149 [exp] 497 / 7e-173 AT5G35730 654 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10031575 [exp] 490 / 2e-167 AT5G35730 597 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 87 / 1e-18 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 85 / 2e-17 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 82 / 3e-16 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10011799 [exp] 72 / 4e-13 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10021164 [exp] 72 / 5e-13 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10036779 [exp] 67 / 1e-11 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121400 [exp] 546 / 0 AT5G35730 694 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G039000 [exp] 496 / 4e-174 AT5G35730 691 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 80 / 1e-15 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 80 / 1e-15 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 77 / 1e-14 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 71 / 7e-13 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 71 / 7e-13 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 71 / 1e-12 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 70 / 1e-12 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 67 / 1e-11 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10015099 pacid=23149591 polypeptide=Lus10015099 locus=Lus10015099.g ID=Lus10015099.BGIv1.0 annot-version=v1.0 ATGTTCGGAGGCCAAGTGATTCCTCCTGGAAACAGTCCGCATTTGAGGAAGTCTGGTAGCCGACCTGTTGTCTTTGATCTTGATGGGGAGCATGGAAGTG GTACGGAAGAAGGGTTTTCACCTTTATCAGAGTCTGATAACTTGAAGAGTCTTCCCATTCAGTTGAGTGCTGCAGCTGCTATGATGCCGTCTCCAGTACT GCTTTGGAGATTGAAGTCCTTTGGATTGTTTGTTTCACTGGATTTCGCTTACTACGGGACAGCAAATGTATTGCAGATTGGATGGGGCTCTGTTATGAGA ATGAGTGTGAATCTACGGGACCTTTTTCTCTATGAGGTGTTCTTGTACTACAATCCTCTTCTTCTTGTGGCATTCACGGTTTGGCTTTGGGGAGCTAATT TGTGGGTCTTTTCACAGTCAACAGTCAGTTACGCTAAGATATTTGATCTTAACCAAAGCCACCTCACACACAGAGAAATATGGAAGATTGCCATGTGGAT GACAATAGTTGTCCCAAGTAGCATGACGGCCTACCTCTACCTATATTCTCATGGAGAAGTGTCGTTGGCAGCTTCCCAACCAGTTCTACTCTACTGCGCT GTTACAATGATTCTGATATTTCCCTTTGATATATTCTACTTGTCATCACGCTACTTCTTGTTAAGGACTATTTGGCGGATACTTTTCCCTCTACAGGCAT GTGACGCAATTTCGTTTGCCGACTTCTTCTTGGCTGATATCTTAACTTCCATGTCAAAGGTCTTTTCAGATCTGGAGCGTTCAGTTTGCCGAATGGTTCA TCGACAGGTTGCAACCATTGCTTGGTTTGAAGCTGACTCGATTTGCGGTAGTCACTCCGTTGCAATCCCTTTGGTCCTCGTTCTTCCCTACCTGTTTCGG CTATTCCAGTGTCTTCGACAGTATAAGGACACCAAGGAGAAAACATCTCTTTTCAACGGTATAGATCATTTCATCTACTTGGTGGACAACCTTTTACCGC CCGCTCTGGCTTCTTTCAAGCTTCTTGAACTGTTTGTACTCCTTCTATTGGGACGTCACCCGAGATTGGGACTTGAGGTATACTTCTGGGTCATTGGAAG CAACTTGATCCTGCGTTGCACATGGACATACAAGCTCTCGGCTCATCTGCGACACAACTACCTGACGGTGTTCGTGATAACTGCACTGGAGATCTTCAGG CGGTTCCAGTGGGTGTTTTTCCGGGTCGAGAACGAGTGGAACAAGATGAGTTCGAAATCGGGAGCCATCCAGCAGCAGCAGCAGGTGTCAATGAGTGAGA TGTCAATGGAGGATGAGAAGCTGAAGTTACTTGCTTCCAGTGATCACAGTGTATAG
AA sequence Show only first row Show all	>Lus10015099 pacid=23149591 polypeptide=Lus10015099 locus=Lus10015099.g ID=Lus10015099.BGIv1.0 annot-version=v1.0 MFGGQVIPPGNSPHLRKSGSRPVVFDLDGEHGSGTEEGFSPLSESDNLKSLPIQLSAAAAMMPSPVLLWRLKSFGLFVSLDFAYYGTANVLQIGWGSVMR MSVNLRDLFLYEVFLYYNPLLLVAFTVWLWGANLWVFSQSTVSYAKIFDLNQSHLTHREIWKIAMWMTIVVPSSMTAYLYLYSHGEVSLAASQPVLLYCA VTMILIFPFDIFYLSSRYFLLRTIWRILFPLQACDAISFADFFLADILTSMSKVFSDLERSVCRMVHRQVATIAWFEADSICGSHSVAIPLVLVLPYLFR LFQCLRQYKDTKEKTSLFNGIDHFIYLVDNLLPPALASFKLLELFVLLLLGRHPRLGLEVYFWVIGSNLILRCTWTYKLSAHLRHNYLTVFVITALEIFR RFQWVFFRVENEWNKMSSKSGAIQQQQQVSMSEMSMEDEKLKLLASSDHSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10015099 [exp]	0	1
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	3.9	0.9040
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	6.2	0.8976
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	6.7	0.8896
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	9.7	0.8681
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	11.8	0.8728
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	14.5	0.8435
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	14.7	0.8581
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	17.5	0.8628
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	19.4	0.8515
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	19.4	0.8525

Compare expression of checked genes

Lus10015099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.