Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21865 312 / 7e-107 PEX22 peroxin 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031575 [exp] 429 / 2e-146 AT5G35730 597 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10039690 [exp] 376 / 4e-132 AT3G21865 349 / 7e-122 peroxin 22 (.1) Lus10027155 [exp] 316 / 2e-105 AT3G21865 310 / 6e-103 peroxin 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121600 [exp] 349 / 2e-121 AT3G21865 322 / 4e-111 peroxin 22 (.1) Potri.017G038800 [exp] 345 / 6e-120 AT3G21865 320 / 2e-110 peroxin 22 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015100 pacid=23149523 polypeptide=Lus10015100 locus=Lus10015100.g ID=Lus10015100.BGIv1.0 annot-version=v1.0 ATGTTGGAATCATCCAAGGAAGAACTCTTGCAGCTGATTAAGCGATTCGGAGCTTATTTGAGCTTCAAGATGTCGAATTACATCCCGATCTCACTCCGTA ATCTGCTCGGCTTCGGTTTTGTTACTTACGTGTGGGCTGAAGGCTTGATCCCAATAGGGGGTTTCTTACCATGCTACGTTTCATATCAGGATTCGAGGTC TGTCGGGGCAATAGCAGGTCTTGCTCTAGCAATGGTATTCACGTGGAGATTGTTGAGGTCACCTAGTGCGCCCCAGAGAAGGCAACCGAAAAGACAAGCT CCTACAACTAGCACCTCTTCTGCAGGTGCCACACAATCTATGCCTTCCGGAGATCGTTCATCTTCGGACGATTCGAGAGCACAGAATGTCGTTGATGAGT TCTTCCAGCCTCCTACTTTGGGGCAAGTAGTGAGGCAAAAGTTAAGTGAAGGCAGAAAGGTCACTTGCTGTTTGCTTGGGGTAATCCTCGAAGAGAGTAC TCCAGAAGAGCTCCAGAAACAAGCAACTGTTAAACCCTCTGTTCTGGAAGTATTGTTGGAGATCACCAAGTTTTGTGATCTTTATCTCATGGAAAGAGTT CTTGACGACGAAAGTGAAAAAAAAGTACTTGATGCTTTGGAGAGTGCAGGAGTTTTTGCCTATGGTGGTTTGGTCAAAGACAAGGTTCTCTTTAGCAGCA CAGAAACTGGAAGAACATCTTTTGTTCGACAACTGGAACCGGACTGGCATATCGACAGCAGCCCTGAGATCGTCACCCAATTAGCTAGATTTATCAAGTA TCAACTCCACATCTCTCCAACGAAGCTCGAACGGTGCCCTGGAAACGTCATCAGCTCTCCATCACTGGAGCAATTCTTTGGATTAGCATGA
AA sequence Show only first row Show all	>Lus10015100 pacid=23149523 polypeptide=Lus10015100 locus=Lus10015100.g ID=Lus10015100.BGIv1.0 annot-version=v1.0 MLESSKEELLQLIKRFGAYLSFKMSNYIPISLRNLLGFGFVTYVWAEGLIPIGGFLPCYVSYQDSRSVGAIAGLALAMVFTWRLLRSPSAPQRRQPKRQA PTTSTSSAGATQSMPSGDRSSSDDSRAQNVVDEFFQPPTLGQVVRQKLSEGRKVTCCLLGVILEESTPEELQKQATVKPSVLEVLLEITKFCDLYLMERV LDDESEKKVLDALESAGVFAYGGLVKDKVLFSSTETGRTSFVRQLEPDWHIDSSPEIVTQLARFIKYQLHISPTKLERCPGNVISSPSLEQFFGLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	2.4	0.9474
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	3.0	0.9264
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	3.7	0.9393
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	5.5	0.9382
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10034705 [exp]	6.5	0.9278
AT3G55290			NAD(P)-binding Rossmann-fold s...		Lus10007039 [exp]	6.6	0.9168
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	7.1	0.9329
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	8.7	0.9213
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	8.7	0.9108
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	9.4	0.9272

Compare expression of checked genes

Lus10015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.