Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52180 325 / 4e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031574 [exp] 707 / 0 AT5G52180 449 / 1e-155 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140900 [exp] 384 / 7e-130 AT5G52180 433 / 3e-149 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10268 [flax] [poplar] Tmemb_161AB Predicted transmembrane protein 161AB
Representative CDS sequence Show only first row Show all	>Lus10015101 pacid=23149520 polypeptide=Lus10015101 locus=Lus10015101.g ID=Lus10015101.BGIv1.0 annot-version=v1.0 ATGCAGCAGACATTATGGCAATCAATTCAGCTCTACAAGCTCCCAATCCTGGAGATCACTCTCTCAATGACACTAACCCTCCTCTCATCAACGATCCTCA AATTCCCAATCTTACTCCTTCACGGACTCCACACTTACATCCAGCCCGATGTAAACCCTTCCACTAACGGCGGCGTCAAAGCCGCAATCCGGAGACCCTC CGAAGCAGACCCACAACCGAAGAGGAAAAGTAAGCAGTCCAAGGACAAGTTTGAGTTCGACGAGAATCAAGCTCAAATCTTCAGACTCAAGCTAGATTCA GCTCACCTGAATTCCCGCCTCTACTTCAAGGACTACTGGTATTCCTTCACTTACTCTCTCATCGCTCTTTCCTGCCTGTTTCTCCACAATTACTTGGGAG AAAGAAATGAAGAAGAAGGAGTAGGAAAAAAGATTGGAGCTTTTGCTAATGGATCGTTGATTCCAGTGGTTTTGATCATTGTATCGCTGCTTAAAGTGTT TGTATCGTTAGGGAAAGCTTCATTTGAGCGATCTGCGTCCAAGAAGTCTGAGAAGAGACTTGGGTTTGTGATGGGGGTTTTAGGGTTTGTGATTGGGTTA TTAATTTGTTCTTCTCGGTTTGCAAGTTCTGTTCTTGATTTTAAATTGGGGTCATCATCAATTGATGGGTATGGGAAGTTCTTCGTTGCTCTAATGATGG GTTGTATTGCTGGATTTCTCTACATGGGTGCTGGCAAGAATGCTCGATCTTTTTGGATTGGGACCGATCAGACTCGATCGAACATGGCGATAATCTCGTG TGGATGGCTTGGCAGAACGCTTCTGTACGTGAATTACGTAACAGTTTTGCTCGCTGCATTGCTGTGGATTCTCCCATTATCCGAGATTCTTCACCGTACT GGCAATGCTGAAAATTTGATTGGGAGTTTAGGGTTCCACCGATCCGAATTCGAGCAAATCAGAATGTGGGCGTTGCTAGGTTCAGCCGCTATACAGATCG TGGCGCTAAGGCCGAACCTGCAGATGTTCTTGAACGAAGCCGTGCTGTCGTGGTACCAGAGGTTGCACGCTAGCAGAGTTCCTGATCTGGAGTTCAGTAG AGCTAAAGTGTTTCTCCATAACCATTACTTGTGCCTTGCTGGTCTGCAGTTCTTCGCCCCTCCGGTACTGGTATTACTCTTTCTCGGGTTGTCGGGGATC GATGGGAATTCGTCGTTGAAGAGTGTTCACGAGGTGATGTGTGGATCTCTGCTGCTGATGCCTTGCACGGCTTTTACTAGAGAAGTTGCTGTGTTTATGG CTTGGTGGGTTGTTTTTGTTTGGACGTTTTTCACTTCTATCAGCTTGCTGTTCTACAGACGCGGCACTTTGTACGTTTCTTGA
AA sequence Show only first row Show all	>Lus10015101 pacid=23149520 polypeptide=Lus10015101 locus=Lus10015101.g ID=Lus10015101.BGIv1.0 annot-version=v1.0 MQQTLWQSIQLYKLPILEITLSMTLTLLSSTILKFPILLLHGLHTYIQPDVNPSTNGGVKAAIRRPSEADPQPKRKSKQSKDKFEFDENQAQIFRLKLDS AHLNSRLYFKDYWYSFTYSLIALSCLFLHNYLGERNEEEGVGKKIGAFANGSLIPVVLIIVSLLKVFVSLGKASFERSASKKSEKRLGFVMGVLGFVIGL LICSSRFASSVLDFKLGSSSIDGYGKFFVALMMGCIAGFLYMGAGKNARSFWIGTDQTRSNMAIISCGWLGRTLLYVNYVTVLLAALLWILPLSEILHRT GNAENLIGSLGFHRSEFEQIRMWALLGSAAIQIVALRPNLQMFLNEAVLSWYQRLHASRVPDLEFSRAKVFLHNHYLCLAGLQFFAPPVLVLLFLGLSGI DGNSSLKSVHEVMCGSLLLMPCTAFTREVAVFMAWWVVFVWTFFTSISLLFYRRGTLYVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52180			unknown protein		Lus10015101 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	2.4	0.9092
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	2.4	0.8850
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	3.9	0.8551
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	4.5	0.8839
AT3G07080			EamA-like transporter family (...		Lus10022798 [exp]	6.3	0.8759
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	7.5	0.8730
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	8.4	0.8612
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	9.7	0.8866
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	10.2	0.8673
AT5G40250			RING/U-box superfamily protein...		Lus10012987 [exp]	10.4	0.8581

Compare expression of checked genes

Lus10015101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.