Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21820 613 / 0 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT2G17900 58 / 6e-09 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT1G26760 57 / 3e-08 SDG35, ATXR1 SET domain protein 35 (.1) AT2G19640 49 / 4e-06 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031573 [exp] 910 / 0 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10026687 [exp] 56 / 6e-08 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10004628 [exp] 55 / 7e-08 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10037155 [exp] 55 / 1e-07 AT1G26760 573 / 0.0 SET domain protein 35 (.1) Lus10029712 [exp] 54 / 2e-07 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G038700 [exp] 635 / 0 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Potri.008G089500 [exp] 60 / 3e-09 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.005G173100 [exp] 55 / 9e-08 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.001G071700 [exp] 52 / 6e-07 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10015102 pacid=23149505 polypeptide=Lus10015102 locus=Lus10015102.g ID=Lus10015102.BGIv1.0 annot-version=v1.0 ATGGATACAATGATCTGTCCAATCGATGCCAGTTGTAGCGAACAAGTTTCAGCTCTTCTCCGGCCGCCGTCTCCTCAGCAAGAGTATTTTGATGAGCTTC TATCTACAAGGCAATGCCATGGCGTGAAGGTTGTGGAAAAGGGAATTCATGGGAAAGGTGTATATGCTGATATGGACTTTGAAGAAGGGGAGCTTGTCTT TAGAGACCAAATGCTTGTTGGTATCCAGCATTCTTCCAACAAGATCGATTGTCTGGTGTGTGGCTTTTGCTTCCGATACATTGGCTCCATAGAACTCCAA GTAGGGAGGAAACTCTATCTACAAAGTCTGGGCGTCTCCACAAGTGATGAATGCGCTGCGGGGATGACACCACACAATTCGAAAAAAGCTCGCCATGGTA CGAACATGGCTGATGCTGATGCTGATGTTGGAGGATGCACTTCTAGCAGTTCAAAGGCTACAGCAGCCCGTCTGCCGAAGGGACTTGTGGAATCAATAAT GAATGGCACGCTGATCTTGCCTCACTCTGATAAATTCCCTTTGCCTTCAACCGTCTCTTGTGCTGGAGGCTGCAGGGAAGCTTACTACTGCAGCACGTCG TGTGCAGAGGCGGACTGGACATCTTCTCATTCGTTGCTTTGTACTGGGAAGCAGTCCGAATCACTCTCTACAGATGCCCTTTTGAAGTTTGCTCAGCACG CCAATGAGACGAATGATATTTTCCTTTTGGCCGCAAAGACAATTGCCTTCACCATTTTAAGGTACAAGAAGCTGAAAGCAGCTTGCTTGGAACAAAAGCA ACCTGCATCAACTGCCTGGGATATACTCTTGGAGGCATGGAAGCCAGTATCGATTGGCTACAAGAAGACGTGGTGGGACTCCATCTCGTTGCCAGACGAT GTCTCTGATGAACCTGCGTTTCGGATGGAAGTGAAGGAGCTTGCATTTACATCACTTCAACTCCTGAAGAAAGCAATTTTCGACAAGGAATGTGAACCAT TATTTTCGCTCGAAATTTATGGGAATATTGTCGGCATGTTTGAGCTTAATAATCTTGACCTAGTCGTGGCTTCACCAGTCGAAGACTACTTCCTGTATAT TGACGATCTTCCGGAGCCTGAAAAGAATGAAGCAGAGAGAATCACAGAACCAATTCTGGATGCCCTTGGTGAAGAATATTCCGTTTGTTGCGAAGGAACG GCATTCTATCCCATACAAAGCTGTATGAATCACTCCTGTTGCCCCAATGCACGAGCCTTCAAACGAGACGAGGACCGGGATGGAGTAGCGACGATCCTTG CCAATAGAGCCATTAGCAAAGGAGAAGAGATTACCATTTCGTACGTAGAGGAAGAGGCTCCATTGGCAGAGAGACGAGTTTCGCTGGCAGATTATGGTTT TGAGTGCCAATGTGATAGGTGCCTGAAAGAAGAAGATGAGAAGATGGATGACCACGCGGAAGAAGATGAAGAAGAAACCTCATAA
AA sequence Show only first row Show all	>Lus10015102 pacid=23149505 polypeptide=Lus10015102 locus=Lus10015102.g ID=Lus10015102.BGIv1.0 annot-version=v1.0 MDTMICPIDASCSEQVSALLRPPSPQQEYFDELLSTRQCHGVKVVEKGIHGKGVYADMDFEEGELVFRDQMLVGIQHSSNKIDCLVCGFCFRYIGSIELQ VGRKLYLQSLGVSTSDECAAGMTPHNSKKARHGTNMADADADVGGCTSSSSKATAARLPKGLVESIMNGTLILPHSDKFPLPSTVSCAGGCREAYYCSTS CAEADWTSSHSLLCTGKQSESLSTDALLKFAQHANETNDIFLLAAKTIAFTILRYKKLKAACLEQKQPASTAWDILLEAWKPVSIGYKKTWWDSISLPDD VSDEPAFRMEVKELAFTSLQLLKKAIFDKECEPLFSLEIYGNIVGMFELNNLDLVVASPVEDYFLYIDDLPEPEKNEAERITEPILDALGEEYSVCCEGT AFYPIQSCMNHSCCPNARAFKRDEDRDGVATILANRAISKGEEITISYVEEEAPLAERRVSLADYGFECQCDRCLKEEDEKMDDHAEEDEEETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	0	1
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	3.0	0.9454
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10017021 [exp]	3.9	0.9273
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	4.2	0.9170
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	4.9	0.9426
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	5.3	0.9453
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	7.4	0.9329
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	8.2	0.9362
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	8.5	0.9295
AT5G59613			unknown protein		Lus10005899 [exp]	8.8	0.9326
AT1G26750			unknown protein		Lus10019740 [exp]	9.2	0.9156

Compare expression of checked genes

Lus10015102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.