Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21810 163 / 8e-46 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031572 [exp] 585 / 0 AT3G21810 176 / 2e-50 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121700 [exp] 224 / 4e-69 AT3G21810 187 / 2e-54 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015103 pacid=23149508 polypeptide=Lus10015103 locus=Lus10015103.g ID=Lus10015103.BGIv1.0 annot-version=v1.0 ATGGTCGAAGGAAAACTGTTCAAGACGAAGTTATGTATACTGTATCAGAAAGGTCGCTGTCATCGCCAAAATTGTTCGTTTGCTCACGGAAGCGCTGAGC TCCGTCACGTTGGTGGCTCTTTCAACGGTAGGCGGAACAATCATGGTGGTGACCTAAGGGATAAGCTTGACAAGAGACTTTCTCCTGAGAGAAGGTATTC TCTGGAGGAAGATTCAAGGGGCCGGCAAAAGTTCCGTGGGTCTAGCCATTCCAGATCACCTGAGAGAAACGGGAAGCGAAGGAGAAGACATCAGTTTGAT GTCCAAAGTGATTTAAAAGTCTCAGATGGAGTAGAAGATCAAGTGAGGAAACAGGAAGTTACGTCTGAGTCAAGACTAGCTCTTGAGAAGCAGTTCAAAG AAGTGCAGGCAGATATTGACTTACTTGATCGAGACAGATCTCAATTGAAGAGTCTCGTGGAGCAGAAAGTTGAAGAAGTAGATAGTCTTAATTCTAGAAT TCAGGAACTTGAGTCTCAGCTTTCCAAAGAGAAAGAAGATTGTAAAAGATCCCAAGCCCGATTGCAAAGGTTGGGAAATCAGCTTGGGTCTTGCTTGTCA GGAACCGAAGGCAATGAAGAGGATTCAAGCATCAATATTGTTAGTGACGGTGAGAACACTAATCATGGGAATATCAAGAGGAATGAAGTCCAGAACTTTT CCTCATTGAGCAAGAAAAGTTTGCCTAAAAAATGGGACTTGGTTAATGACCTACACCTAGGAACTCCAGCGAACAGTGGAGCTTACCATGCCGAGACTTC TAAACTTGACAACCTTCCAAATGCACCTGTTCGGATGATTCTCAACAAGGACGGTGAAGCTGTTCACAGCGGGGGAGGCAAGGGTTCTTCTTTCAGCACA CCCACTTCAGATAAGCCAAAAGGCATAGGTGCCACTACATCCATACCACCTACCAGCATTGCTGCTCATGCATTTGACGAAGCACTCGACAACGAAGGCG GCGATAAAGTTGAGGTGGTCGAAAACGTCTCAGCAGAGCTTAACAACAGAGGGTTCTCTGTTCTACCCAGGAGGAGGTTCCCCTTCTTGCCGCCTCCCCT TCCTTCTCTCCCAAGAAACCATTATTCCCAGTACAAGGGTAATGACGAGAATGTCAACGTGGACGATGAGATGGACGAGGTGGACATTGTTTGA
AA sequence Show only first row Show all	>Lus10015103 pacid=23149508 polypeptide=Lus10015103 locus=Lus10015103.g ID=Lus10015103.BGIv1.0 annot-version=v1.0 MVEGKLFKTKLCILYQKGRCHRQNCSFAHGSAELRHVGGSFNGRRNNHGGDLRDKLDKRLSPERRYSLEEDSRGRQKFRGSSHSRSPERNGKRRRRHQFD VQSDLKVSDGVEDQVRKQEVTSESRLALEKQFKEVQADIDLLDRDRSQLKSLVEQKVEEVDSLNSRIQELESQLSKEKEDCKRSQARLQRLGNQLGSCLS GTEGNEEDSSINIVSDGENTNHGNIKRNEVQNFSSLSKKSLPKKWDLVNDLHLGTPANSGAYHAETSKLDNLPNAPVRMILNKDGEAVHSGGGKGSSFST PTSDKPKGIGATTSIPPTSIAAHAFDEALDNEGGDKVEVVENVSAELNNRGFSVLPRRRFPFLPPPLPSLPRNHYSQYKGNDENVNVDDEMDEVDIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	0	1
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	2.0	0.8162
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	5.5	0.8101
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	6.5	0.8492
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	7.2	0.8354
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10033411 [exp]	9.8	0.7626
					Lus10033943 [exp]	11.0	0.7961
AT3G18770			Autophagy-related protein 13 (...		Lus10005812 [exp]	11.6	0.7980
AT5G10960			Polynucleotidyl transferase, r...		Lus10042746 [exp]	12.3	0.8000
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	13.0	0.8290
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10023530 [exp]	15.1	0.8021

Compare expression of checked genes

Lus10015103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.