Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05270 437 / 9e-154 TraB family protein (.1) AT2G32340 379 / 4e-131 TraB family protein (.1) AT5G52030 102 / 2e-24 TraB family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031571 [exp] 540 / 0 AT1G05270 368 / 3e-127 TraB family protein (.1) Lus10038420 [exp] 406 / 6e-141 AT1G05270 371 / 6e-127 TraB family protein (.1) Lus10023387 [exp] 295 / 5e-96 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10038884 [exp] 110 / 6e-27 AT5G52030 458 / 3e-161 TraB family protein (.1.2) Lus10015005 [exp] 110 / 3e-26 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10038419 [exp] 76 / 1e-15 AT1G05270 68 / 3e-13 TraB family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121900 [exp] 469 / 3e-166 AT1G05270 404 / 7e-140 TraB family protein (.1) Potri.017G038500 [exp] 463 / 6e-165 AT1G05270 417 / 1e-146 TraB family protein (.1) Potri.007G121800 [exp] 336 / 4e-114 AT1G05270 323 / 6e-109 TraB family protein (.1) Potri.012G133900 [exp] 114 / 9e-29 AT5G52030 426 / 7e-149 TraB family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0572 [flax] [poplar] TIKI PF01963 [flax] [poplar] TraB TraB family
Representative CDS sequence Show only first row Show all	>Lus10015104 pacid=23149567 polypeptide=Lus10015104 locus=Lus10015104.g ID=Lus10015104.BGIv1.0 annot-version=v1.0 ATGGACCCAGCACTGCCGGAATCCACGGAGGCGCCGCCACGTGAGGGTGAGGACTTCATCCACGTTGACAATCCCGATCCGATGAGCGACAGCATCGTCA ATGTCGCAGATGAGCTGAGGAATGACGACAACGGCGATGTCGAGGAAGCAGGAGAAGAAGTAGAAGAAGTGGCGACGACTGAGACTGCTGAGAGGAGTGC AGAACCTCCTGCGGAGCTCTCAAAGACTGTGGCGCTAAATTGTGAGTCCAAGGCTGAATCTGGCTCCTGCGATGTCTACTTGGTCGGCACCGCTCATGTA TCAGAGGAATCGTGCAGGGAAGTTGAAGCTATCATCCGATATTTGAAACCAGAGGTGGTCTTTCTGGAGTTGTGCCCTAGTCGTGTGACGGTTCTTACAC CTCAGAACTTGAAGGTGCCGACCATGGGAGAAATGGTGGAGATGTGGAAAAAGAAACACAACTTGTTTGGGATTTTATATAGCTGGTTCCTTGCCAGGGT TGCTAGTAAGCTTGAGGTATTACCTGGTGCTGAGTTTCGTGTGGCTTACGAAGAAGCAAAAAAGTATGGTGGAAGAGTGGTACTTGGTGATCGTCCTGTT CAGGTGACATTGCGAAGAACGTGGTTCAAAATGCCACTTTGGCACAAGACAAAACTAGTGTACTCCTTGCTTTTTCAAGCAGTCTTCTTATCAAGTGCCG AGGAACTCAAGAAAATGCTCAAGGAGATGGATGATGCTGACATGCTGACTCTTGTGATCCAAGAAATGAGCAAGGACTACCCTACGCTTATGGAAACGCT AGTACACGAGCGAGATCAGTACATGTCGTCCATGCTACTTAGACACGCCAGCGAGAAATCCTCGGTTGTGGCAGTAGTTGGGAGAGGGCATCTTCGAGGA ATTCAGAAGCATTGGAAGCAGCCTGTATCGATCGATGAGCTCATGGAAATTCCGAAGCCGAAAGCAGCAGTTTCAGCATTGAAGATCATTACCTCCCTGG GTTTGGCAGCTGCTGGTGTGGCCATTATTTCAGGAATTTACCTTTCCCGCAAGAAATAG
AA sequence Show only first row Show all	>Lus10015104 pacid=23149567 polypeptide=Lus10015104 locus=Lus10015104.g ID=Lus10015104.BGIv1.0 annot-version=v1.0 MDPALPESTEAPPREGEDFIHVDNPDPMSDSIVNVADELRNDDNGDVEEAGEEVEEVATTETAERSAEPPAELSKTVALNCESKAESGSCDVYLVGTAHV SEESCREVEAIIRYLKPEVVFLELCPSRVTVLTPQNLKVPTMGEMVEMWKKKHNLFGILYSWFLARVASKLEVLPGAEFRVAYEEAKKYGGRVVLGDRPV QVTLRRTWFKMPLWHKTKLVYSLLFQAVFLSSAEELKKMLKEMDDADMLTLVIQEMSKDYPTLMETLVHERDQYMSSMLLRHASEKSSVVAVVGRGHLRG IQKHWKQPVSIDELMEIPKPKAAVSALKIITSLGLAAAGVAIISGIYLSRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	0	1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	4.2	0.8678
AT1G54920			unknown protein		Lus10004472 [exp]	4.9	0.8623
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10018581 [exp]	6.7	0.8706
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Lus10000921 [exp]	18.5	0.8575
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	19.4	0.8346
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	23.0	0.8410
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10008061 [exp]	28.2	0.8083
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10003539 [exp]	29.4	0.8447
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	29.5	0.8537
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	29.7	0.8059

Compare expression of checked genes

Lus10015104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.