Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 579 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 547 / 0 Galactosyltransferase family protein (.1) AT4G26940 507 / 2e-180 Galactosyltransferase family protein (.1.2) AT1G32930 456 / 4e-160 Galactosyltransferase family protein (.1) AT1G11730 442 / 4e-155 Galactosyltransferase family protein (.1) AT1G77810 440 / 3e-154 Galactosyltransferase family protein (.1.2) AT1G33430 418 / 2e-145 Galactosyltransferase family protein (.1.2) AT1G22015 404 / 1e-139 DD46 Galactosyltransferase family protein (.1) AT5G53340 230 / 1e-72 Galactosyltransferase family protein (.1.2) AT4G32120 203 / 4e-62 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031567 [exp] 644 / 0 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 592 / 0 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 584 / 0 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 545 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 504 / 3e-179 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 459 / 2e-161 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10020042 [exp] 455 / 2e-160 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10008282 [exp] 456 / 4e-160 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 454 / 4e-159 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153700 [exp] 609 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 585 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 476 / 4e-168 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 471 / 3e-166 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 468 / 5e-165 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G151400 [exp] 466 / 7e-164 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 449 / 2e-157 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 443 / 3e-155 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 420 / 2e-145 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 239 / 8e-76 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015107 pacid=23149488 polypeptide=Lus10015107 locus=Lus10015107.g ID=Lus10015107.BGIv1.0 annot-version=v1.0 ATGTCGTCCAAGAGCTCTTCTGTATCTCAGAAATGGACTGTTTTCCTCTGCTTGCTCTGCTTCTGCGCTGGATTGCTCTTCACCAACAGGCTTTGGTCTG TACCGGAACCACAAGGTCTTCTAACAAGGACAACTTCAATGGAAGCTGAGAAACTCAAGTTGATCTCTGAGGGTTGTGGCTCTATTCTAACTCTGCAACA GAAGGAAGTGAGACCGGATTCAAACTCGATACAGACATTAGACAAGACTATATCAACCCTGGAGATGGAACTAGCTGCAGCAAAGGCAGTTCATGAATCT ATACTCAACGGATCTCCCCAATCCGAGGACTCGACAAAGAAAAAGACGACTTTGACCTCCTCCTCATCGTCGAGGAAGAGGAAACACTTGATGGTGGTCG GGATCAATACCGCCTTTAGTAGCCGGAGGAGAAGAGACTCGGTCCGTTCCACTTGGATGCCACAAGGGGACAAGAGGAAGAAACTTGAAGAAGAGAAGGG TATCATCATTCGTTTCGTCATTGGTCACAGTGCTACACCAGGGGGCATATTTGATAGAGCCATCGAAGCAGAAGATAGAAAACATGGGGATTTCTTAAGA CTGGATCATGTTGAAGGTTACTTGGAATTGTCAGCAAAGACAAAGATCTACTTTGCTACTGCTATTGCTATGTGGGATGCAGATTTCTATGTCAAAGTTG ACGATGATGTCCATGTTAACATCGCAACACTTGGAGAAACCCTAGTTAGACACAGGAAGAAACCAAGAGTTTACATTGGATGCATGAAGTCTGGCCCTGT CCTTAACCAAAAGGGAGTGAGGTACCATGAGCCGGAGTACTGGAAATTCGGCGAGGCAGGGAACAAGTACTTCCGCCACGCCACAGGCCAACTCTATGCC ATTTCGCACGATTTAGCTTCGTATATTTCAGTAAACCAGAATGTCCTCCACAAGTTTGCTAATGAAGATGTCTCATTAGGGTCGTGGTTCATCGGCCTTG ATATCGATCACATTGACGATCGTAGACTATGTTGCGGGACTCCACCAGATTGTGAGTGGAAGGCTCAAGCTGGAAATGTGTGTGTGGCTTCATTCGACTG GAGCTGCAGCGGGATCTGCAGATCGGCTGACCGGATCAGGGAAGTCCATAAAAGGTGCGGGGAAGGACAGAATGCTGTATGGACTGCCAAACTTTGA
AA sequence Show only first row Show all	>Lus10015107 pacid=23149488 polypeptide=Lus10015107 locus=Lus10015107.g ID=Lus10015107.BGIv1.0 annot-version=v1.0 MSSKSSSVSQKWTVFLCLLCFCAGLLFTNRLWSVPEPQGLLTRTTSMEAEKLKLISEGCGSILTLQQKEVRPDSNSIQTLDKTISTLEMELAAAKAVHES ILNGSPQSEDSTKKKTTLTSSSSSRKRKHLMVVGINTAFSSRRRRDSVRSTWMPQGDKRKKLEEEKGIIIRFVIGHSATPGGIFDRAIEAEDRKHGDFLR LDHVEGYLELSAKTKIYFATAIAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLNQKGVRYHEPEYWKFGEAGNKYFRHATGQLYA ISHDLASYISVNQNVLHKFANEDVSLGSWFIGLDIDHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWSCSGICRSADRIREVHKRCGEGQNAVWTAKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	0	1
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	1.7	0.9019
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	2.4	0.8944
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	3.5	0.8784
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	3.5	0.8926
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	4.9	0.8460
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	6.5	0.8469
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	9.2	0.8730
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	9.5	0.8304
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10007520 [exp]	10.1	0.8515
AT4G33625			unknown protein		Lus10020442 [exp]	13.2	0.8111

Compare expression of checked genes

Lus10015107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.