Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 330 / 3e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 226 / 6e-66 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 199 / 1e-55 RPF2 rna processing factor 2 (.1) AT1G12300 199 / 1e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 194 / 7e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 192 / 3e-53 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 190 / 2e-52 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 188 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 185 / 5e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 183 / 5e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015112 [exp] 564 / 0 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 510 / 6e-174 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 477 / 6e-163 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 471 / 1e-160 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 409 / 2e-136 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 400 / 4e-133 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 391 / 2e-129 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 386 / 1e-127 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 375 / 3e-123 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 352 / 8e-114 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 212 / 6e-61 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 210 / 5e-60 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 202 / 2e-57 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019200 [exp] 192 / 2e-53 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 190 / 8e-53 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G457300 [exp] 189 / 2e-52 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 188 / 7e-52 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 186 / 6e-51 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 183 / 3e-50 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015108 pacid=23149489 polypeptide=Lus10015108 locus=Lus10015108.g ID=Lus10015108.BGIv1.0 annot-version=v1.0 ATGGCGTTATTTGAAGGCGGAAGTGGTCGTCGGAATTCCCACGGTGACGGCGGAAGTGCGGTGGTAGTACTAGTACTCGGATTAATCGACCGGTTCCGTA AAATGAAAGTAGAGTGGAAGTATGAAATACCTAAAGTACCCCTTGGTCATTCTTACCCCTTCAATCTGGATAAACAAGCAACACCTTCCGCTGGTCATTC TTCATTCCCCAATCTTCAACCATTGGAGCGACCATCATCAAAATTCAATTCCAGAAGTCGTAAAGTCACTGCCTTTTCTTCCAGCTTAGAAACTCCATAC CACATGCCAAGACGAAACTGTCATATCTCTTCGAATGCAGATTCCTCCTCTTATCTCTGGAATTTGGTTGTGAAGGAGAAGAAACTGAACGCGGCATACG CGTATATCGAGGACACGGTCGCCTCTCAACGCGAGATCACAGACATAATCGCGTGCGGCCGCCTAATCCAAAGGCTGTGCGCTGCTGGAAGGACGAGCAA GGCGGCTCGAGTGGTCGAGTTATTAGAGCGTTCCGAGGAAACAACACTCGAAGCTCGTGACTACACTGTATACGTTAAAGGGCTGTGTGAAGCAGGGGAG GTTGATAATGCCGTGAAGGTACTGCGAAGACTGCATTCGGAGGAACGGCTTTGTAACCCTGATGTCTATCTTTACAACATTGTGATGAATGCCATGTTTG GGAAAGGCCGGTTCGAACAAGGGATGAAGCTCTTGGATGAGATGAGGGGTAAAGGAGTCGAACCTAATGTCGTCACTTGTAGTATTGTGGTGAATGGGAT GTATAGGAATAGGAGATTGGATGAAGCTATGAAGTTGGTGACCTCCAGGTCGACTTCTTTCCACGGCTTGAGCCCAGGTGTTGAATCGTACAATATTGTC TTGAGTGCCCTCTGTCATGCCGATAGGTATGAGGATGCTGCGGAAGTGTTAGCTGATATGGACGATCGAGGCATTTCGCCTTGTGCTTATACTTTCGGGA TCTTGATTAGGGTCTTATGCTCTAAGACATTGTTGTATCGAGCAATCACTTTGTTGGAGAGTATGCCGCAGTACGGATGCACTCCCAGTGTGCATCATTA CGAACTAGTTATCCGTTGCTTGTGCAAGGAGAAGAATGTAGAGATGGTGATTGAATGTATTGAGGTAATGATATCTAGAGGGTGTTACCCCGATATCGTC GTGTTTAATACTTTGTTGGCAGCATTGTGTAAATATGGCCAGGTTGATGCTGCTTTGGAGTTCTTTAACGAGTTGATCAACAGCAGAAGCTGCCAGGCTA ATCTAGCTACTTATAATATAATGATTGAGTGGCGTTCGAGACTAGGGAGGGCGGATGAAGCTCTCGAGCTTCTGAACGAGATTCGTGGTAGCTACGGTTT CAAACCGAAAGCTGTCACCTACGCAGGGCTGATCGTGGGGCTCATTGGCGAATCGGAAATTCACAAAGCGGTCGAGATTTGGCACGAACTGAGAGGGTCG CGAGTTGTGATACCGCCTAAATGCTACTTTTGGATTATCAAGGCGCTCTGTGATGCTGGAGACATTGATCGTGCGATCGACTTAGTGGTGTACGTGGTTT CGAAGGGGTTTCGACCTAGTCAAGGTATCTATGCCTCCCTGGTTGAAGGGTTGGCGAGTGCTGGATTAGTTGAGGAGGGGTGGGAGTTGCTGAATGAGCT GTCTGTAAGAGGAGCAATGGACAAAGAATGGACCTTGGCAGCAGCAACGAGGATAGAAAATATGTGCAGGTTCGACTAA
AA sequence Show only first row Show all	>Lus10015108 pacid=23149489 polypeptide=Lus10015108 locus=Lus10015108.g ID=Lus10015108.BGIv1.0 annot-version=v1.0 MALFEGGSGRRNSHGDGGSAVVVLVLGLIDRFRKMKVEWKYEIPKVPLGHSYPFNLDKQATPSAGHSSFPNLQPLERPSSKFNSRSRKVTAFSSSLETPY HMPRRNCHISSNADSSSYLWNLVVKEKKLNAAYAYIEDTVASQREITDIIACGRLIQRLCAAGRTSKAARVVELLERSEETTLEARDYTVYVKGLCEAGE VDNAVKVLRRLHSEERLCNPDVYLYNIVMNAMFGKGRFEQGMKLLDEMRGKGVEPNVVTCSIVVNGMYRNRRLDEAMKLVTSRSTSFHGLSPGVESYNIV LSALCHADRYEDAAEVLADMDDRGISPCAYTFGILIRVLCSKTLLYRAITLLESMPQYGCTPSVHHYELVIRCLCKEKNVEMVIECIEVMISRGCYPDIV VFNTLLAALCKYGQVDAALEFFNELINSRSCQANLATYNIMIEWRSRLGRADEALELLNEIRGSYGFKPKAVTYAGLIVGLIGESEIHKAVEIWHELRGS RVVIPPKCYFWIIKALCDAGDIDRAIDLVVYVVSKGFRPSQGIYASLVEGLASAGLVEEGWELLNELSVRGAMDKEWTLAAATRIENMCRFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	1.4	0.9539
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	3.2	0.9366
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	4.0	0.9233
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	7.3	0.9118
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	8.5	0.9071
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	8.8	0.9170
					Lus10005791 [exp]	8.8	0.9236
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	10.4	0.9205
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028851 [exp]	10.6	0.8592
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	11.3	0.9135

Compare expression of checked genes

Lus10015108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.