Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 347 / 2e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 239 / 6e-71 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 200 / 3e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 198 / 2e-55 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 197 / 3e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 195 / 1e-54 RPF2 rna processing factor 2 (.1) AT1G12700 195 / 6e-54 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63080 192 / 1e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 192 / 2e-53 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 191 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037012 [exp] 672 / 0 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 508 / 4e-175 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 478 / 8e-164 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 477 / 3e-163 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 473 / 7e-162 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 458 / 8e-156 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 454 / 4e-154 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 451 / 1e-153 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 421 / 2e-139 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 361 / 1e-117 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 228 / 5e-67 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 222 / 7e-65 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050500 [exp] 203 / 1e-57 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.011G144300 [exp] 200 / 1e-56 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 194 / 9e-54 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 191 / 4e-53 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 190 / 9e-53 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 189 / 1e-52 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 189 / 2e-52 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015109 pacid=23149540 polypeptide=Lus10015109 locus=Lus10015109.g ID=Lus10015109.BGIv1.0 annot-version=v1.0 ATGGATTTCGTAGTGCTTCAAGACCTGAGTACCCTCAGAAATGGCGGTTTCGCTAGAGGCAAGGCTAGGATGAAGATGATGAAGATGATGAAGAAGAAGG ATAAAGTTTGTTGGAGCGCGGCGAGTTCTCCTTCTTCTCTGTCCTTGACAAATCGTCACGTTGCCGCCATTTCTTCAAGCTCGGAAATTCCAACCTACTC TCCCCACAAGAATCAGGTGACCGATTCCTACTCTCTAGATTTCAAAACTCGTCTCTGGAAGCTGATATCAAAGGGGAAATTGGAGGAAGGATTCAAGTAT CTCAAGAATACGATCGTCTTCTCCTCTCGAGAACAAACCCTAGACTTAGCGGTATGCAGAGGCCTAATTGAAGCTCTGTGTAGCACCGGAAGAACTGGAA TGGCTGCTCAAGTGCTCCAGCTATTAGAGCGTTCCGAAACAACAACGCTCGACACTCGAACCTACACCAAATTCGTAGAGGGGCTCTGTAAAGCAGGGGA GCTCGATAATGCCTTGAAGCTGTTCGAGAGATTGCCTTGTAAGCCTGATGTCTACATGTACAACACTCTGATCAACGCAATGTTTCGAAAAGGCAGATTC GAGCAAGCGATGAAGCTCTTGAATGATATGACGAGTCAAGGAATCGAACCCGATAACGTTACTTGCAGCACTGTGGTCAACGGGATGTGTAAGCAAGGCA GATTGGATGAAGCTATTAGGTTGGTAACCTCCTCCAGGATTCCTTCTTGTGTCGAATCTTACAATGCTGTATTGAATTGCCTGTGTTATACCGGAAGGTT GAACGATGCTGCGAAATTGTTCTCTGATATGCTCGATCGAGACTGTTTGCCTTCTGCTGTTACTTTCACCATCTTGATTCGAACCCTGTGTAGTGAAGGA TTAATGTATCAAGGCATCTCCTTGCTGGAGAGTATGCCGGAGTATGGAATCACTCCGAATCTGTATCACTACAACCGGATCATCCACGGATTATGCAAGC AGAACGATATGGCGATGGCGGTTGAGTGTATCGAGGTAATGATATCTCGAAACTGTTATCCGACAATCGTGGTGTTCAACACATTGTTGGCGGCATTGTG GGAGCACGGCAAGGTTGATGCCGGCGTTGACTTGTTTAAAGAGCTGACTGCCAGCAGGTGCTGCGGGGCAAATCAGGCTACTTACGATATAGTGATCGAG GGGCTTTCGAGTTCGGGGAGAGTGGACGAAGCTCTGGAAGTTTTGGACGAGGCGCGGGGAATCAAAGGTTTCAAACCGGACGCGATCGGATACGCTAAGC TGATCGTTGCGCTTGTCCAAGAGCGGAGACTCAACGAGGCGATGGGGTTTTTCGACGAGCTGAAGAGGTCGGGGGTGGTGGTGGTGCCGGTCAAATGCTG CAGCTGGATCGTGGAGGCATTATGCGGTGTTGGAGAGGTTGACCGCGCGATCAAGGTGGTGGTGTACATGGTTTCGAAGGGTTGTGGTCGCGGTCGTATT TGGCAGAGTCAAACTGCATTTGCCGAGGTGATTGAAGGGTTGGCGAGGGCCGGATTGGGTCGGGAGAGTGTGGAGTTGCTTAACGAGCTGATCGTGAGGG GAGCTATGAACAGAGATATGAGCATTGCTGTAGCAGAGAGGTTAGAAAAGATGGCTAGCCAGCGAGGCTCGATAACCCGCTCGACTAAGAATCGGGAGTT GGCTCAAGCTCGGCTCGATTAA
AA sequence Show only first row Show all	>Lus10015109 pacid=23149540 polypeptide=Lus10015109 locus=Lus10015109.g ID=Lus10015109.BGIv1.0 annot-version=v1.0 MDFVVLQDLSTLRNGGFARGKARMKMMKMMKKKDKVCWSAASSPSSLSLTNRHVAAISSSSEIPTYSPHKNQVTDSYSLDFKTRLWKLISKGKLEEGFKY LKNTIVFSSREQTLDLAVCRGLIEALCSTGRTGMAAQVLQLLERSETTTLDTRTYTKFVEGLCKAGELDNALKLFERLPCKPDVYMYNTLINAMFRKGRF EQAMKLLNDMTSQGIEPDNVTCSTVVNGMCKQGRLDEAIRLVTSSRIPSCVESYNAVLNCLCYTGRLNDAAKLFSDMLDRDCLPSAVTFTILIRTLCSEG LMYQGISLLESMPEYGITPNLYHYNRIIHGLCKQNDMAMAVECIEVMISRNCYPTIVVFNTLLAALWEHGKVDAGVDLFKELTASRCCGANQATYDIVIE GLSSSGRVDEALEVLDEARGIKGFKPDAIGYAKLIVALVQERRLNEAMGFFDELKRSGVVVVPVKCCSWIVEALCGVGEVDRAIKVVVYMVSKGCGRGRI WQSQTAFAEVIEGLARAGLGRESVELLNELIVRGAMNRDMSIAVAERLEKMASQRGSITRSTKNRELAQARLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	0	1
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	1.0	0.8802
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	1.7	0.7951
AT1G26100			Cytochrome b561/ferric reducta...		Lus10021715 [exp]	4.7	0.7665
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	9.2	0.7586
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	10.0	0.7682
AT3G18310			unknown protein		Lus10027301 [exp]	12.4	0.7135
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	13.8	0.7219
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	15.7	0.7977
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	16.4	0.7802
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	17.9	0.7517

Compare expression of checked genes

Lus10015109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.