Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 345 / 1e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 235 / 1e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 222 / 4e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 200 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 194 / 2e-53 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 191 / 4e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 189 / 1e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 188 / 3e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 184 / 5e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 179 / 4e-49 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031566 [exp] 1025 / 0 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 714 / 0 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 519 / 4e-180 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 514 / 6e-178 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 443 / 5e-150 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 425 / 3e-143 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 398 / 3e-132 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 388 / 5e-129 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 363 / 2e-117 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 381 / 1e-125 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 245 / 1e-73 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 232 / 6e-69 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 228 / 2e-67 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G457300 [exp] 222 / 5e-65 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 190 / 2e-52 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 189 / 2e-52 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 186 / 2e-51 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 184 / 3e-50 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 182 / 7e-50 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015110 pacid=23149584 polypeptide=Lus10015110 locus=Lus10015110.g ID=Lus10015110.BGIv1.0 annot-version=v1.0 ATGGATTTCGTACTGCGCACCCACTACAAAGGTTTCTGCTTGGCTACAATAAGAAATGGCGGTTTCCTTACACACAACAAGGTGAAGCATAAGAAGAACA GAGGTAAAGCTAGTTCCTTATCTTCTTGTTCTTTACCCTTAAGTAGCCGGCGAGTCACCGCCGTTCATTTGAGCTCAGAGATTCCAACCCAGCGAGTTCC CACGAATCAGGTGATGACCAATTATAATAATCCTCACTCATCTGATGCCAACAGGCGTCTCTGGATACTGGTTAGAAAGATGAGATGGGGGAAGGGATTC ACGCATCTCAAGAACATGGTCGTATCTCGAGGAGAACTTCCTGACTTGGCTGCATCAAGGCTCCTAATTGCAGAGCTGTGTAACGCTGGGAAAACCAAAA TGGCAGCTCAAGTAGTCGAGTTTCTAGAGTGGTCTCATGGGAAAACCCTTGATGATGTTCGTATCTACAACGAATTGATATTGGGGCTTTGTAAATCAGG TCAGATTGATGATGCGCTGAAGCTCTTCTGCAGAATGGAAGAGAAAGAGAAATGTTGTTGTAGCCCTGATGCATATACGTATAACATCCTGATCCATGCG ATGCTGAAGCAACGGGGATTCGAGGACGGGGTGAAGTTCTTGGGCGATATGAGGAGTAAAGGGTTCGAACCTGATGCCGTTACTCGTGGCATTGTGGTCA CTAGGTTGTGTAAAGAAGGGAGATTGGATGAAGCTGTTGAGTTGATAAACTCTGATGGCTGGTTTCCTTGTGTGGAATCTTACAATGCTGTCATTACTGG CTTCTGTGAAGCTGGAAGGTTGATGGATGCTGAGAAGCTATTAGCTGACATGGCTGCTTGGGGAGATGATTGTAAACCTACTGCTGTTACTTTCAGGATC TTGATTAGCACTCTATGCCGGAAATTTTTGTTAAGTAAAGCAATCGAATTGCTCGAGAGTATGATGCCACTGTACGGATGCACTCCCGATCCTTCTCATT ACAGGCTCATCATCCATTCCTTGTGCAAGGAGAAGAAACTGGGAATGGCAATGAAGTATGTCGAGGTGATGATATCCCGAGGATGTTATCCGAACACCGC AATTTTCAACACTTTGCTCGCGGCATTGTGGAAAGACGACAAGATCGATGCTGGTTACGAGCTGTTTCGCGAGTTAAAGTCTAGCCGATGCTGCTCAGCT AATTTAGGTAGTTATAGTATAGTGATAAAAGGGCTTTCGGTAGTGGGGAGAGCGTACGAAGCTATGCAGCTTCTCGAGGAGATGTTCCGTGAAGGTTTCG TGCCTGATGAGCCCACCTACACGAAGCTGATTACCGGGCTGATCAGGGAGGGGAGATTTTGCGACGATGTGATCGAGATTCTGGAGCAGCTTGAAATGGG GTTGCAGGTTGAGTTGCCGTGTTTTAGCTATAATTGGTTCATCAAAGCGCTGTGCAGCGTTGGAGAGACTGATCGTGCGATCGACGTACTTGTGTACATG GCTCGGAAGGGTTGTAATCCGACTCGAGCTTCGTATGCCAACGTGATTGAAGAGTTGGCAAGGTGCGGGTTAGGTAGGGAGGCCACGGAGTTGATGAACG AGCTGTTCCGGAGAGGAGTCTTGGATAAATACTGGACTAGGGGAGTAACACAGAGGATAGACAGGATTTGCGGGTAG
AA sequence Show only first row Show all	>Lus10015110 pacid=23149584 polypeptide=Lus10015110 locus=Lus10015110.g ID=Lus10015110.BGIv1.0 annot-version=v1.0 MDFVLRTHYKGFCLATIRNGGFLTHNKVKHKKNRGKASSLSSCSLPLSSRRVTAVHLSSEIPTQRVPTNQVMTNYNNPHSSDANRRLWILVRKMRWGKGF THLKNMVVSRGELPDLAASRLLIAELCNAGKTKMAAQVVEFLEWSHGKTLDDVRIYNELILGLCKSGQIDDALKLFCRMEEKEKCCCSPDAYTYNILIHA MLKQRGFEDGVKFLGDMRSKGFEPDAVTRGIVVTRLCKEGRLDEAVELINSDGWFPCVESYNAVITGFCEAGRLMDAEKLLADMAAWGDDCKPTAVTFRI LISTLCRKFLLSKAIELLESMMPLYGCTPDPSHYRLIIHSLCKEKKLGMAMKYVEVMISRGCYPNTAIFNTLLAALWKDDKIDAGYELFRELKSSRCCSA NLGSYSIVIKGLSVVGRAYEAMQLLEEMFREGFVPDEPTYTKLITGLIREGRFCDDVIEILEQLEMGLQVELPCFSYNWFIKALCSVGETDRAIDVLVYM ARKGCNPTRASYANVIEELARCGLGREATELMNELFRRGVLDKYWTRGVTQRIDRICG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	2.2	0.9742
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	2.4	0.9634
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	3.7	0.9668
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031792 [exp]	3.9	0.9571
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	5.2	0.9540
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	5.8	0.9340
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	6.5	0.9565
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	6.9	0.9438
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	7.7	0.9407
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	8.0	0.9540

Compare expression of checked genes

Lus10015110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.