Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 332 / 4e-107 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 226 / 2e-66 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 217 / 3e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 183 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 181 / 6e-49 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 177 / 2e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 177 / 3e-48 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 176 / 6e-48 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 174 / 4e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 172 / 1e-46 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031566 [exp] 724 / 0 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 705 / 0 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 476 / 2e-163 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 464 / 1e-158 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 432 / 3e-146 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 425 / 2e-143 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 425 / 4e-143 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 397 / 7e-133 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 368 / 1e-119 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 363 / 3e-119 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 228 / 2e-67 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 220 / 1e-64 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 219 / 4e-64 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G457300 [exp] 204 / 1e-58 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 192 / 3e-53 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G154800 [exp] 176 / 7e-48 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 176 / 3e-47 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 172 / 3e-46 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 167 / 2e-44 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015111 pacid=23149532 polypeptide=Lus10015111 locus=Lus10015111.g ID=Lus10015111.BGIv1.0 annot-version=v1.0 ATGGATTCTGTACTGCGCACCCACTACGAAGGTTTTTACTTGGCTACAGTAAGAAAAGGCGGTTTCTTTACAGACAAGGTGAAGCAGGGTTCTTCTTCTT CATCATCATCCTTAAGAAGCCGTCAAGTTGCTGCTGTTCATTTGAGTTTGGAGACCAATCAGGTGACCAATTACAATCCTTACTCTTCTGATAACAACAA GCGTCTCCGTGAATTGGTTAACAAGCGGAAATGGGGAAAGGGGTTCGCGCATCTTAAGAACATGGTCGTATCACGGGGAGAAATCCCTGACTTGGCTGCA ACCAGGCGCCTAATTGAAGAGCTCTGCAAGGCTGGAAAACCCAGAATGGCAGCTCAAGTAGTCGAGTTCTTAGAACGTTCTCATGGGAAAACAACCCTTG ATGATGTTCGTGTTTACAACGAATTGATTTTGGTGCTTTGTAAAGTAGGTCAGATTGATAATGCCTTGAAGCTCTTCCACAGAATGGAAGAGGAGGAGGG GGGATGTCGTTGTAGCCCTGATTCGTATACGTTCAACATTCTGATCAAAGCGATGCTTGAAGAACGCGGGTTCGCCGAAGGGGTGAAGTTCTTGGATGAG ATGAGGAGGAGTAGAGGATTCGAACCTGACGCAGTTACTCGTGGCACTGTGGTCGATTGGTTGTGTAAAGAAGGGAGATTAGATGAAGCTGTTCAGTTGG TAAACTCTGATGGCTGGCCCCCTTGTGTGGTATCTTACAATGCTGTCATTAATGGCTTGTGTGAAGCTGGTAGGTTAATGGATGCTGAGAAGCTCTTAGC TGGTATGTCTGCTCAGCCTTCTGCTTTTACTTTCAGGATCTTGATTAGCACCTTATGCGGCAAGGGTTTTTTGGGTAAAGCGATCGATTTGTTGGAGAGT ATGATGCCAAAGTATGGATGCAATCCCGATCAAACTCATTATAAGATGATCATCCAGACCTTGTGCAAGAGGAAGAAACTGGGGATGGCGATGGAGTGTA TTGAGGTAATGATATTGCGATCCTGTTATCCGAACACCACCATCTTCAACATTTTGCTTGCAGCATTGTGGAAAGACTGCAAGGTTGATGCCGGTAACGA GCTATTTCGCGAGCTAAAGTCTAGCCGATGCTGCTCGGCTAATACAGCCACTTACTCTATAGTGATAGAGGGGCTTTCGACAGTCGGAAGAGCGTACGAA GCTACGCAAGTTCTGCACGAGATGCTTTCCAAGAAAGGTTTCGAACCCGATGCCTCCACCTATACCAAGCTGATCACGGGGCTTATTAGGGAGGGGAAAT GCGACGATGTGGTCGAGATTCTCGAGGAACTGGAAGGGTTGGAGCAAGTGGTGTTGCCATGGTTTAGCTATAACTGGTTCGTCGAAGCACTGTGCAGCGT CGGAGAGACTGATCGTGCGATCGACTTAGCGGTATACATGGTTTCGAAGGGTCGTCAACCTAGTCGAGCTGTTTATGCCGCCTTGGTCGAAGGGTTGGCT AGTGCTGGATTAGTTAAGGAGGGGATTGAGTTGCTGAACGAGCTGTCCCTAAGAGGAGCTTGGGACAAAGGCTGGACCATGGGAGTAGCAACAAGGATAG AAAATGTGTGCAGGTTGGACTAA
AA sequence Show only first row Show all	>Lus10015111 pacid=23149532 polypeptide=Lus10015111 locus=Lus10015111.g ID=Lus10015111.BGIv1.0 annot-version=v1.0 MDSVLRTHYEGFYLATVRKGGFFTDKVKQGSSSSSSSLRSRQVAAVHLSLETNQVTNYNPYSSDNNKRLRELVNKRKWGKGFAHLKNMVVSRGEIPDLAA TRRLIEELCKAGKPRMAAQVVEFLERSHGKTTLDDVRVYNELILVLCKVGQIDNALKLFHRMEEEEGGCRCSPDSYTFNILIKAMLEERGFAEGVKFLDE MRRSRGFEPDAVTRGTVVDWLCKEGRLDEAVQLVNSDGWPPCVVSYNAVINGLCEAGRLMDAEKLLAGMSAQPSAFTFRILISTLCGKGFLGKAIDLLES MMPKYGCNPDQTHYKMIIQTLCKRKKLGMAMECIEVMILRSCYPNTTIFNILLAALWKDCKVDAGNELFRELKSSRCCSANTATYSIVIEGLSTVGRAYE ATQVLHEMLSKKGFEPDASTYTKLITGLIREGKCDDVVEILEELEGLEQVVLPWFSYNWFVEALCSVGETDRAIDLAVYMVSKGRQPSRAVYAALVEGLA SAGLVKEGIELLNELSLRGAWDKGWTMGVATRIENVCRLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	0	1
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	1.4	0.9357
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	1.7	0.9450
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	3.2	0.9229
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	3.9	0.9315
AT3G23760			unknown protein		Lus10043212 [exp]	4.2	0.9234
					Lus10040882 [exp]	6.5	0.9259
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	6.9	0.9272
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	8.1	0.9261
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	8.9	0.9245
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	11.8	0.9038

Compare expression of checked genes

Lus10015111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.