Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 232 / 1e-68 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12300 218 / 5e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 202 / 1e-56 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 199 / 3e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 195 / 5e-55 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 194 / 2e-54 RPF2 rna processing factor 2 (.1) AT3G22470 191 / 3e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 189 / 7e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 186 / 7e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031565 [exp] 764 / 0 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 590 / 0 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 478 / 6e-164 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 442 / 3e-150 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 425 / 2e-143 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 424 / 5e-143 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 420 / 7e-142 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 416 / 6e-140 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 401 / 4e-134 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 361 / 2e-118 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 229 / 6e-68 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 227 / 4e-67 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 224 / 2e-65 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 198 / 3e-56 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G019200 [exp] 197 / 7e-56 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 196 / 2e-55 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 194 / 2e-54 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G217600 [exp] 194 / 2e-53 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 190 / 4e-53 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015112 pacid=23149580 polypeptide=Lus10015112 locus=Lus10015112.g ID=Lus10015112.BGIv1.0 annot-version=v1.0 ATGGATTTTGTAGTACGTACCCACGACGTTGTTTGCTCGCTTCAAGACTCGGGTACCTTCAGAAATGGCGGTTTCTTTAGAGATAGCGCGAAGATGAAGA ACAGTTATAAAGTTGGTTCGAGCTTGAGGAAGAGAAATAATGATTCTTTTTCTTTATTATTATCCTTAGGAAGTCGTCAAGTTACTGCTGTTTCTTCCAG CTTGGAAACTCCACCCCACACTTCTTCCCACAAGCCAAGTCAGTGGACAGAATCCTTCTTCTCCGACGGAAACGCCTTTCTATGGAAGCTGGTTGTAAAG GAAGGGCGACTGGAGGAGGCAATCGCGTGTCTTGAGAATATGATCGTCTCTCAACACGAAATCCCAGACATAGCTGCGTGCACCCGCCTAATCGAAAAGC TGTGTGCTTCTGGAAGAACGAGGAAGGCAGCTCGAGTGCTCGAGCTATTAGAGCGTTCCGATTGCGATCCCGATGTCTATCTGTATAACATTGTGATGAA TGCTATGTTTGGGAAAGGCAGGTTCGAGCAAGGGATGAAGCTCTTGGATGAGATGGTCAGTTTGGGAATCGAACCTGATGCCGTCACTTGTAATATTGTG GTCCATGGGATGTGTAAGAATGGGAGATTTGATGAAGCTTATAAGTCGTTGGCCTCCACGTCGACTTCATACGATTGGACTCCTTGTGTCGAATCGTACA ATTCTGTCTTGAACAGCCTGTGTACTGCTGAAAGGTTCGAAGATGCTGCGAAACTGTTAGCTGATATGGGTGATCGAGGCTTTCCGCTGTCTGGTGTTAC TTTCAGGATCTTGATTAGGGCCCTATGCGCTAAGAACTTATCGGATCAAGCAGTCACTTTGTTGGAGAGTATGCCACGGTACGGATGCACTCCAGATGTG TATCATTACAGCCCAGTTATCCATAGCTTTTGCAAGGAGAAGAATATAGAGATGGCGATTGAGTGTATTGAGGTAATGATATCCAAAGGGTGTTACCCCA ACATTTCCATATTTAATTCTTTGTTGAAAGCATTGTGTAAATACGGCCAGGCTGATGCTGCTTTGGGGTTCTTTAACGAGTTACTCAGTAGCAGAAGCTG CCCGCCTAATCTAGCTAGTTATAATATAATGATCGAGGGGCTTTCGAGACTAGGGAGGGTGGATCAAGCTCTCGAACTTTTGCACGACGTGCGTAATGGA AGAGGATTCAAACCCAACGCCTTCTCCTATATCTATACCAACGCAATCACATATGCCGCGCTGATCGTGGGGCTTATTAGTGAACGGAAAATCTACCAAG CGATCCAGATTTGGGACGAACTGAAAGGGTCGGGAGCCACGATACCGTGTAAATGCCATAATTGGATTGTCAGGGCGCTCTGCGGCGCTGGATACATTGA TCGTGCGATCGACTTACTGGTTTACATGGTTTCGAAGGGTTGTCTACCTACTCAAGCTGTTTATGCCGCCCTGATCGAAGGGTTGGCGAGTGCTGGATTA GTTGAGGAGGGGCAGGAATTGCTGGACGCGCTGTCCCTAAGAGGAGCTTTGGATAAAGGTTGGACTTCAGGAGTAGCAGCAAGGATTGAAAGTATCGGCA GGTTGGACTAA
AA sequence Show only first row Show all	>Lus10015112 pacid=23149580 polypeptide=Lus10015112 locus=Lus10015112.g ID=Lus10015112.BGIv1.0 annot-version=v1.0 MDFVVRTHDVVCSLQDSGTFRNGGFFRDSAKMKNSYKVGSSLRKRNNDSFSLLLSLGSRQVTAVSSSLETPPHTSSHKPSQWTESFFSDGNAFLWKLVVK EGRLEEAIACLENMIVSQHEIPDIAACTRLIEKLCASGRTRKAARVLELLERSDCDPDVYLYNIVMNAMFGKGRFEQGMKLLDEMVSLGIEPDAVTCNIV VHGMCKNGRFDEAYKSLASTSTSYDWTPCVESYNSVLNSLCTAERFEDAAKLLADMGDRGFPLSGVTFRILIRALCAKNLSDQAVTLLESMPRYGCTPDV YHYSPVIHSFCKEKNIEMAIECIEVMISKGCYPNISIFNSLLKALCKYGQADAALGFFNELLSSRSCPPNLASYNIMIEGLSRLGRVDQALELLHDVRNG RGFKPNAFSYIYTNAITYAALIVGLISERKIYQAIQIWDELKGSGATIPCKCHNWIVRALCGAGYIDRAIDLLVYMVSKGCLPTQAVYAALIEGLASAGL VEEGQELLDALSLRGALDKGWTSGVAARIESIGRLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	1.0	0.9710
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	1.4	0.9539
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	2.0	0.9419
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	3.0	0.9420
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	3.9	0.9393
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	4.0	0.9342
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	4.2	0.9334
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	4.7	0.9288
AT3G04550			unknown protein		Lus10022014 [exp]	5.8	0.8938
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	6.0	0.9391

Compare expression of checked genes

Lus10015112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.