Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 324 / 1e-103 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 233 / 4e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12300 189 / 2e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G79080 185 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 182 / 3e-49 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 179 / 5e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 177 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 176 / 1e-47 RPF2 rna processing factor 2 (.1) AT1G62914 171 / 1e-46 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G22470 171 / 6e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031564 [exp] 940 / 0 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 473 / 8e-162 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 471 / 3e-161 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015111 [exp] 440 / 2e-149 AT1G09900 343 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 418 / 2e-140 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015109 [exp] 402 / 3e-134 AT1G09900 351 / 6e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 375 / 4e-123 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 365 / 4e-120 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031565 [exp] 340 / 2e-108 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 347 / 3e-112 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 232 / 1e-68 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 226 / 1e-66 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 206 / 6e-59 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 189 / 4e-53 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 188 / 3e-52 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 189 / 4e-52 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 181 / 7e-49 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 177 / 3e-48 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 177 / 5e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015113 pacid=23149596 polypeptide=Lus10015113 locus=Lus10015113.g ID=Lus10015113.BGIv1.0 annot-version=v1.0 ATGGGTTTTGTACTTCTTCAAGACTTGAGCACCGTCAGAAATGGCGGCTTCGCTAGAGACGATTCAAGGGTGAAGAAGAAGAAGGGCAAAGTTTGCTCGA GCGCGAGGAGTTCTTCTTCTCTATCCTTAAGAAGTCACCGTCGAGTTTCTTCCGCCGTTCCTTCGAGTCTGGATTCCCCAGCTTACGCTTCTTCTTCGCC CAAGCTAAGTCATGTTTTTACGAACCAGGTGAGCAATTCCCGCTCGTCCGAGCGCGACAATCGTCTATGGAAGTTTATTGTAGAGAAGCAGTTGGAGAAG GCATTCACGTATCTTAAGAACAGGGTCGTCGTCTCTCGAGAAGAGATCTCCGATTTAGCTGCTTGCAGGCGGCTGATTGACGATCTGTGTAAAACACGAC GAACTAGAATGGCAACTGAGGCAGTCGAGCTTTTGGAGGCAACGACAACACTGGATATTCCTACTTACACTGTATTGATTAAGGGGCTTTGTAAAGCAGG TGAGATTGATGCTGCGTTGAAGCTCTTCCGCAGAATGGAAGAGGGATACTGTAGTTGTAAACCAGACGACTATACCTATGGCATTCTAATCAATGCGATG TTTTCGAAACTCGGATCGGCGGAAGTGATGAAGTTCTTGGGTGAGATGATGAGTAAAGGATTCGAACCTGATGTCCTAACTCGTACTGCTGTAGTCAGCG GGTTGTGCAAAGAAGGTAGATTAGATGAAGCTGTTAAGTTGATGTCCTTTAATGGCTGGAATCCTTGTGTGGGATCTTACAATGTGGTCATGAGTGGCTT GTGTAAAGCTGGAAGGGTAAATGATGCTGAGAAGCTGTTAGCCGATATGGCTGCTCGGGGAGGCGATTGTTCGCCTTCTGCTATTACTTTCAGGATGTTG ATTAGGACTCTATGCCTCAGGGGTTCATTCTACAAAGCAATGGCTTTGTTGGAGAGTATGAAGCTGAAGTATGGATGCACTCCCAATGCTTCTCATTATA TCCTCATTATCCATTCCTTATGCAAGCTGAAGAAGATGGGATTTGCGGTCGAGTATATCGAGGTAATGATATCCAGAGGATGTTATCCGAATATTTCCAT CTTTAATACTTTGTGTGCTTCATTGTGGATACACGGCTATGCCGATGCTGCTGTTGGCTTGTTTAATTTGTTGAAATCTAGCAGAGGTTGCTGGCCGAAT GCAGTTAGTTACGAAATAGTGATTCAGGGGCTTTCTAGATTTCGGAAATCAGACCAAGCTCTGCGACTTCTACGGGAGATGCGTAGTGTGGATGAAGGGC TTGAGCCTACCGCACTCTCTTATGTCAGTCTGTTTGGTGGGCTTATTAGGGACGGGAAAGCTGACGATGCGATCCAGATTTTGGACGAAATGGAGTCGTT GAAGGAGGAGGTGCCGTATAGTGCCTACAATATGATCATCAATGGACTCTGCAGCATTGGGGAAACTGATCGTGCGATCGACTTGCTGGTGTTTATGTTT TCCAAGGGCTGTAGACCCATTCAATCTACGTACGCCGCCCTGCTTGAAGGGCTGGCAAGGGGCGGATTAGGTAGGGAGGCCATGGAGTTGCTAAACGAGT TGTCTGTAAGACGAATTATGGGCGATAGTTGGTCCAAGGGATTAGCAGCAAGGATAAAAACGATGTGCGGCTTGGAATAA
AA sequence Show only first row Show all	>Lus10015113 pacid=23149596 polypeptide=Lus10015113 locus=Lus10015113.g ID=Lus10015113.BGIv1.0 annot-version=v1.0 MGFVLLQDLSTVRNGGFARDDSRVKKKKGKVCSSARSSSSLSLRSHRRVSSAVPSSLDSPAYASSSPKLSHVFTNQVSNSRSSERDNRLWKFIVEKQLEK AFTYLKNRVVVSREEISDLAACRRLIDDLCKTRRTRMATEAVELLEATTTLDIPTYTVLIKGLCKAGEIDAALKLFRRMEEGYCSCKPDDYTYGILINAM FSKLGSAEVMKFLGEMMSKGFEPDVLTRTAVVSGLCKEGRLDEAVKLMSFNGWNPCVGSYNVVMSGLCKAGRVNDAEKLLADMAARGGDCSPSAITFRML IRTLCLRGSFYKAMALLESMKLKYGCTPNASHYILIIHSLCKLKKMGFAVEYIEVMISRGCYPNISIFNTLCASLWIHGYADAAVGLFNLLKSSRGCWPN AVSYEIVIQGLSRFRKSDQALRLLREMRSVDEGLEPTALSYVSLFGGLIRDGKADDAIQILDEMESLKEEVPYSAYNMIINGLCSIGETDRAIDLLVFMF SKGCRPIQSTYAALLEGLARGGLGREAMELLNELSVRRIMGDSWSKGLAARIKTMCGLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	0	1
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	2.0	0.8942
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	2.0	0.8891
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	3.5	0.8875
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10018051 [exp]	4.0	0.8687
AT5G36930			Disease resistance protein (TI...		Lus10004719 [exp]	4.5	0.8624
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	4.7	0.8452
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	5.2	0.8671
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	5.3	0.8759
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	5.3	0.8724
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	5.7	0.8556

Compare expression of checked genes

Lus10015113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.