Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32415 996 / 0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT1G54440 208 / 3e-57 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT5G35910 210 / 1e-56 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) AT2G25910 56 / 8e-08 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (.1.2) AT1G56310 48 / 3e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G24340 45 / 0.0002 3'-5' exonuclease domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031563 [exp] 1411 / 0 AT2G32415 1039 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Lus10039170 [exp] 207 / 3e-55 AT5G35910 828 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10005691 [exp] 205 / 1e-54 AT5G35910 814 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020293 [exp] 181 / 7e-47 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10020300 [exp] 149 / 5e-37 AT5G35910 477 / 1e-157 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Lus10010930 [exp] 51 / 5e-06 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022376 [exp] 47 / 8e-05 AT5G24340 544 / 0.0 3'-5' exonuclease domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G229000 [exp] 1056 / 0 AT2G32415 1050 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) Potri.013G062800 [exp] 204 / 2e-54 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.019G038701 [exp] 200 / 6e-53 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.015G009500 [exp] 48 / 2e-05 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1) Potri.005G020000 [exp] 47 / 8e-05 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF00570 [flax] [poplar] HRDC HRDC domain CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10015114 pacid=23149543 polypeptide=Lus10015114 locus=Lus10015114.g ID=Lus10015114.BGIv1.0 annot-version=v1.0 ATGGATGAAAGAAAGTACAGGATTAGGATAGCGGTGACGCTAATCTCTCTCGTGGCGGCGGTAATGACTGTCGCCTTCACGGCGGCGCAGTACCGGCGAA GGAGAAAGGCTAAGGAGCGCTCTCGAAGTTCCTGCTACTTGCACGCCGAAGGAAAGCCACAGTTCGGATTCAGGAAAGTCTTCGCTGACAACTCCTTCTC TCACTTCAAGCACTCCAAGACGAACAGCGGTGAATCGGGAAAAGCGGAGAATGGTTCCAGTTTACATCCGTATGAACAGGAGGTGAAGGCATTGCTGGAT AATCCTCCTGCTGAGTTCGAATTCGATGTTACTAGTTGGAGTAAGGAAATGAGTGACTCGTATGTTTGGATTGAGACTGAATCTCAGCTGAAGGAGCTAG CTGAGTTGCTGAGCAAGGAGAGAGTTTTCGGTGTTGATACGGAGCAGCATAGCCTTCGGTCATTTCTTGGTTTCACTGCTCTGATCCAGATATCGACGGC AACCGAAGATTATCTCATTGATACGATTGCATTGCATGATTCAATGGGAGTTCTAGGGCCAGTTTTTGCTGATCCAAACATATGCAAGGTGTTCCATGGA GCTGACAATGACGTGCTTTGGCTGCAAAGAGACTTCCGCATCTATGTGGTTAATTTGTTCGATACCGCAAAAGCTTGTGAGGTGTTGTCGAAGCCACAGA AGTCGTTAGCATACTTGCTTGAAACCTATTGTGGAGTGTACTCGAACAAATTGCTACAGCGTGAAGACTGGAGATTGCGTCCCTTATCATCGGAGATGTT AGAGTATGCTCAGATGGATGCACACTATCTATTATATATAGCTCATTGTTTAATTGGCGAGCTCAGGCAGCAAGATGTAGATCACTCGCCTTCTCCAGAT GAAAAGCTGCAGTATGTTGAGGCCACTCGTCGTTCGAACATGATATGTATGCAACTATACACGAAGGAGATTGATCGTTATCCTGGGGAGGCAGCTGCAT CATCAATTCTTTTCCGTCACTTTAATATTCAAGAAGGTTCATCAATTTCCAGCGAGACACAGGATCTTGTAAGACGTCTGTGCACTTGGAGAGAACTAAT GGCTCGTGTGCATGATGAGAGCTTAAGATACGTCTTATCAGATCAAGTCATTGTGTCCCTGGCAGGAAATTCTCCAACAAATCTAACAGAACTCTCCCAG CTGATTTCCGATGCTGATAATCAAGTGGAACCACTGAATCCCACTTCTTTTCTTCCTCTGTCAACCGTCATCACGAGCCATTTAGATGATTTATTCGATT TAATCCAGGACACAGAAAGCAGCAGCCTTGATGACGTAATCTCTACAGTCCTCCAAAAGTGCCTCGGTGAAAACGGAAGCTGTCTGTTGTCTATCTATAA CTATGCTCTGCTTATGAACAGTGACATCAAACTTACAAGTAGAATGGTATCCAAACCGAAAGGGGGTAGAAATCCAAAACAAGCACGGAAAGCTTCACGA GCACGGCAGCATTTCGTCGAGAAGTTCTCCTGTAAAGCTCCGGTATATCACAACTGCAGGATTTATGCTAACGACGGACGTTTGCTTTGCTATTGTGACC GCAGAAAGCTTGAATGGTATCTCCGTCGAGATTTAGCGAAGCTTGTAGACGAAGATCCTCCAGCCATTATGCTTCTTTTCGAGCCAAAGGGCCGTCCAGA AGATGAAGACAACGACTTCTACATCCAGAGTAAGAGGAACATATGCGTCAGCTGTGGTGAAGGTGGCCACTATCTACGGTACCGAATAATCCCTTCATGC TACAGAATACATTTCCCTGAGCATTTGAAGAGCCATCGTTCTCATGATATCGTCCTACTCTGCGTGGACTGTCATGAAGTAGCCCATGCCGCGGCTGAGA AGCACAAGAGAAAAATCGCTGCTCAATATGGTATTCCGTTGTTTGTTCGTAGAGTGGCGGATCTTAAAGAATCCATAATCATTCCAGAGCCGGATTCATC GATAGGTCCTGCAGATGAGCCGGGTGTGTCTCCTTTGCAACTTCGTACTGCTGCCATGGCTCTTCTTCGCCACGGGAAGAGCATGCCTTTGAAGCGACAT GATGAACTTATAAAAATTGTCATGCAGTATTACGGAGGAAGAGAAGTGTCGGAGGACGATTTGGAGAGAGCTTTGCTGGTTGGAATGAGCCCCCATGAGA GAAGGCGGTTCCGGAAGAAAAGGGGTACGTCCACCACAAAGAAATCTCCTGGAAATTTGGAAGAGGAACACGGGGGATGCAATGGCGCTGTAAAGTGTAA TGCTGCTGAGGTTTCTTCGAAAGATGTACCGGTTCTTCTCCAGAAGGAGCAAACCAATCCGATAGATAAAGAGACAGATCTCGAGAACGCAAACCATGAC GAAAGGGAAGAAGCTTCTGATACAATAGAGGCTGTCAACGAAGACGAGGAAACTAATGGCACGGGAGGAGATGGAACCTATTCTTCTAAGAACAACTCGA AACTATCTCTGCTAGGACACGGTCCCCATGGGAAACAGGTCGTGGAGCACCTAATGAACGAGGAAGGAGAGGATGGCATCCGCCAGTTCTGCCAGACGTG GAGACAAGTATTCGTCGAAGCGCTCAACCCTCGCTTCTTGCCCTCTGGATGGACCGTGATGCACAGCGGTAGAAGGGACTTCGGCGAGTTCAGTGTGTAC AACCCTGCCAAGAAGGTTATACCTGATGATGCCTGA
AA sequence Show only first row Show all	>Lus10015114 pacid=23149543 polypeptide=Lus10015114 locus=Lus10015114.g ID=Lus10015114.BGIv1.0 annot-version=v1.0 MDERKYRIRIAVTLISLVAAVMTVAFTAAQYRRRRKAKERSRSSCYLHAEGKPQFGFRKVFADNSFSHFKHSKTNSGESGKAENGSSLHPYEQEVKALLD NPPAEFEFDVTSWSKEMSDSYVWIETESQLKELAELLSKERVFGVDTEQHSLRSFLGFTALIQISTATEDYLIDTIALHDSMGVLGPVFADPNICKVFHG ADNDVLWLQRDFRIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVYSNKLLQREDWRLRPLSSEMLEYAQMDAHYLLYIAHCLIGELRQQDVDHSPSPD EKLQYVEATRRSNMICMQLYTKEIDRYPGEAAASSILFRHFNIQEGSSISSETQDLVRRLCTWRELMARVHDESLRYVLSDQVIVSLAGNSPTNLTELSQ LISDADNQVEPLNPTSFLPLSTVITSHLDDLFDLIQDTESSSLDDVISTVLQKCLGENGSCLLSIYNYALLMNSDIKLTSRMVSKPKGGRNPKQARKASR ARQHFVEKFSCKAPVYHNCRIYANDGRLLCYCDRRKLEWYLRRDLAKLVDEDPPAIMLLFEPKGRPEDEDNDFYIQSKRNICVSCGEGGHYLRYRIIPSC YRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRKIAAQYGIPLFVRRVADLKESIIIPEPDSSIGPADEPGVSPLQLRTAAMALLRHGKSMPLKRH DELIKIVMQYYGGREVSEDDLERALLVGMSPHERRRFRKKRGTSTTKKSPGNLEEEHGGCNGAVKCNAAEVSSKDVPVLLQKEQTNPIDKETDLENANHD EREEASDTIEAVNEDEETNGTGGDGTYSSKNNSKLSLLGHGPHGKQVVEHLMNEEGEDGIRQFCQTWRQVFVEALNPRFLPSGWTVMHSGRRDFGEFSVY NPAKKVIPDDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32415			Polynucleotidyl transferase, r...		Lus10015114 [exp]	0	1
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020916 [exp]	1.4	0.9362
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	2.6	0.9383
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	3.9	0.9351
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	4.0	0.9302
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	5.7	0.9075
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	7.4	0.9233
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	8.5	0.9070
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	8.5	0.9002
AT5G06590			unknown protein		Lus10021091 [exp]	11.2	0.8931
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	13.2	0.9180

Compare expression of checked genes

Lus10015114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.