Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05180 860 / 0 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 810 / 0 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT3G25880 92 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G30110 67 / 1e-11 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT4G24940 64 / 8e-11 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT2G21470 62 / 4e-10 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G50680 62 / 4e-10 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT5G50580 62 / 4e-10 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT5G55130 61 / 7e-10 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT5G06460 61 / 1e-09 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031562 [exp] 958 / 0 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10028846 [exp] 69 / 2e-12 AT4G24940 475 / 7e-170 SUMO-activating enzyme 1A (.1) Lus10008977 [exp] 68 / 5e-12 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1) Lus10031292 [exp] 67 / 2e-11 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022666 [exp] 66 / 4e-11 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10012507 [exp] 65 / 1e-10 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10017479 [exp] 61 / 1e-09 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10000697 [exp] 61 / 1e-09 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 60 / 2e-09 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G229100 [exp] 917 / 0 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.014G153500 [exp] 909 / 0 AT1G05180 873 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G100800 [exp] 66 / 1e-11 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.001G355800 [exp] 65 / 7e-11 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.001G280600 [exp] 65 / 1e-10 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 64 / 2e-10 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 64 / 3e-10 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G120200 [exp] 61 / 2e-09 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.015G099000 [exp] 59 / 3e-09 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.004G158900 [exp] 58 / 1e-08 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Lus10015115 pacid=23149590 polypeptide=Lus10015115 locus=Lus10015115.g ID=Lus10015115.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCGAAAACCAAATACGATCGCCAACTCAGGATATGGGGGGAGCAAGGACAGGCAGCATTGGAGAAAGCTGGCATATGCTTGCTTAACTGTG GTCCTACCGGCTCCGAGACATTGAAGAATCTTGTTCTTGGCGGAGTTGGATCTATCACAGTGGTTGATGGATCGAAAGTGGAACTTGGTGATCTTGGGAA CAATTTCATGGTGGATGAATCAAGTGTAGGCCAACCGAAGGCAAAATGCGTGTGTGCTTTTCTTCAAGAGCTCAATGATGCTGTGAAGGCTAAGTTCATA GAAGAGTACCCAGAGGCTCTGATTGAGACGAATCCATCATTCTTTTCTCAGTTCACTTTGGTAGTGGCCACTCAGCTTGCTGAGGATTCTATGATTAAGC TCGATAAAATCTGTAGGGAGGCAAATGTGATCTTGCTCTTTGCACGTTCTTATGGCCTTGCAGGGCTAGTTAGAGTCAGCGTAAAGGAACATGTGGTCAT CGAGTCAAAGCCCGATCATTTTCTAGATGACCTCAGATTGAATAATCCGTGGCCTGAACTTAAGAGTTTTGCAGAAACCATTGACTTGAATGTGGCAGAT CCTGTTGCCCATAAGCACACCCCTTATGTCGTCATTCTCGTAAAGATGGCCGAGGAATGGGCCAAAGATCACAGTGGTAGCCTCCCAACAACCAGGGATG AGAAAAAGGAATTTAAGGAGCGTCTCAGAGCCAAGATGGTATCAGCCGACGAGGACAACTATAGAGAAGCCATGGATGCCTCATTTAAAGTTTTCGCTCC CAGAGGAATAAATTCAGAATTGCGGCAGATCATTGATGATAGCTGTGCTGAAGTTGATTCCAGTTCATCTGACTTTTGGGTGATGGTGGCTGCATTAAAG GAGTTCATTATGAACGAAGGTGGAGGAGATATGCCACTTGAGGGTTCGATACCTGATATGACGTCTTCGACTGAGCTTTACGTAAACCTGCAGAAGATCT ACCAAGCAAAAGCAGAAGCTGATTTTCTTGTTATCGAAGAAAAGGTGAGGAGTATTCTAAAGAAAACCGGCCGAGACCCAGATTGCATCTCGAAGTCGGT AATAAAAATTTTCTGTAGAAACGCCAGGAAGCTAAAGGTTTGCAGGTATCGCCTTATCGAGGATGAGTTTAACAACCCTTCTTTATCTGATCTGCAGAGG TACTTGAGCAGTCCAGACTATAGCTACGCTGTGGGATTTTACATCTTGCTTCGGGCTGTCGATCGCTTCGCTGCGAACTACAAGGTTATTCCGGGTCAAT ACGAGGGGGAAATTGACGAGGACATAGCTCGATTGAAATCTACCGCGGTCACCCTACTCAACGACCTGGGTTGCAATGCCTCGCCCTTGAATGATGACCT TGTGAGCGAAATGTGGCGGTATGCAGGTTCGGAGCTCCATGCTGTCGCTGCTTTCGTCGGGGGAGTTGCATCGCAAGAAGTGATCAAGCTTATAACAAAG CAGTTTGTTCCCATGTCCGGCACGTTCATATTCAACGGCATCGATCACAAATCTCAATTACTATCGTTGTGA
AA sequence Show only first row Show all	>Lus10015115 pacid=23149590 polypeptide=Lus10015115 locus=Lus10015115.g ID=Lus10015115.BGIv1.0 annot-version=v1.0 MAEPKTKYDRQLRIWGEQGQAALEKAGICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVELGDLGNNFMVDESSVGQPKAKCVCAFLQELNDAVKAKFI EEYPEALIETNPSFFSQFTLVVATQLAEDSMIKLDKICREANVILLFARSYGLAGLVRVSVKEHVVIESKPDHFLDDLRLNNPWPELKSFAETIDLNVAD PVAHKHTPYVVILVKMAEEWAKDHSGSLPTTRDEKKEFKERLRAKMVSADEDNYREAMDASFKVFAPRGINSELRQIIDDSCAEVDSSSSDFWVMVAALK EFIMNEGGGDMPLEGSIPDMTSSTELYVNLQKIYQAKAEADFLVIEEKVRSILKKTGRDPDCISKSVIKIFCRNARKLKVCRYRLIEDEFNNPSLSDLQR YLSSPDYSYAVGFYILLRAVDRFAANYKVIPGQYEGEIDEDIARLKSTAVTLLNDLGCNASPLNDDLVSEMWRYAGSELHAVAAFVGGVASQEVIKLITK QFVPMSGTFIFNGIDHKSQLLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10015115 [exp]	0	1
AT3G56680			Single-stranded nucleic acid b...		Lus10043439 [exp]	5.1	0.7866
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	8.3	0.7959
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	13.3	0.7029
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	15.2	0.7365
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	16.6	0.7536
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10021683 [exp]	23.6	0.7527
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	26.8	0.7609
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	29.9	0.7394
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	29.9	0.7289
AT3G23910			unknown protein		Lus10016653 [exp]	30.7	0.6554

Compare expression of checked genes

Lus10015115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.