Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05710 1654 / 0 ACO3 aconitase 3 (.1) AT4G35830 1563 / 0 ACO1 aconitase 1 (.1.2) AT4G26970 1557 / 0 ACO2 aconitase 2 (.1) AT5G54950 97 / 5e-24 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031561 [exp] 1793 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1772 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1768 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10028405 [exp] 1581 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1576 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10040070 [exp] 1564 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 1472 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153400 [exp] 1707 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1689 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.005G108100 [exp] 1578 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.007G060900 [exp] 1576 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.015G130201 [exp] 125 / 1e-33 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10015116 pacid=23149581 polypeptide=Lus10015116 locus=Lus10015116.g ID=Lus10015116.BGIv1.0 annot-version=v1.0 ATGTATATAAACGGTTCCGCCACCTCTGCCGCTTCCTCACTCCTCCGAAGAGCGTCCAGGTCCACCCCACGAAACGCATCTTCCTTTTCTTCTCCAGCCG CTTCCACCTCGTCGACGCCGAAGCTTTCCTCTCCGGTTTCAGGCTTCAGTCGCCAGCAGCACCGATCTCTCAGCTCCTCTGCCGCCGTCCGATCCCTCTC GCGGTGGAGCCACGGTTTTAGCTGGCTGTCTCACGTCAGTGTACGGGCGCACACTAGAGCTGTGTCAATCCCGGTGATCGAGCAGTTTCAGAGGAAGCTC GCCACTATGGCTTCTGAACATCCTTTCAAGGAGATTTTCACTTCCCTCCCAAAGCCAGGTGGAGGAGAATTCGGAAAGTTCTACAGTCTGCCTGCACTTA ACGATCCCCGTATTGAGAAGCTGCCCTATTCCATCAGGATTCTCTTGGAATCTGCCATTCGCAACTGTGACAACTTCCAAGTCACTAAAGAAGATGTTGA GAAGATTGCTGACTGGGAAAATTTGTCCCCGAAACAAGTGGAGATCCCCTTCAAGCCTGCCCGTGTCCTCCTGCAGGATTTTACTGGAGTACCTGCTGTT GTTGATCTTGCTTCTATGCGTGATGCAATGGGGAACCTTGGAGGTGATCAGAAGAAGATCAACCCGTTGGTCCCTGTGGATCTTGTAATTGATCATTCAG TTCAAGTAGACGTTACGAGATCAGAGAATGCTGTACAGGCTAATATGGAGCTTGAGTTTCAGAGGAACAAGGAGAGGTTTGCTTTCCTGAAATGGGGATC TACTGCTTTCGATAATATGCTTGTGGTTCCTCCTGGTTCTGGCATTGTACATCAGGTGAATCTCGAGTATCTTGGTCGGGTTGTATTCAACAAGGATGGT GTGATGTACCCTGACAGCGTGGTCGGGACTGATTCGCATACTACCATGATTGATGGATTGGGAGTTGCTGGCTGGGGAGTAGGAGGCATTGAAGCTGAGG CAGCAATGTTGGGTCAGCCCATGAGCATGGTATTACCCGGTGTTGTTGGCTTCAAATTATCTGGAAAACTGCAGAATGGTGTGACTGCCACCGATCTGGT TCTGACAGTAACTCAAATGTTGAGGAAACATGGTGTTGTCGGAAAATTTGTAGAATTTTATGGGGATGGAATGAGCAAGCTATCATTGGCTGATAGAGCG ACTATAGCGAACATGTCTCCTGAATATGGTGCAACTATGGGGTTCTTCCCTGTCGATCATGTCACTCTTGATTATCTTAAACTGACAGGAAGGAGTGATG AAACTGTTTCGATGATCGAGTCATATCTCCGGGCAAATAAGATGTTCGTTGACTATAATGAGCCGCTGATAGAAAGAGTGTATTCATCATACCTTCAATT GGACCTTTCGGAGGTTGAGCCCTGTATTTCTGGACCCAAGAGACCTCATGATCGAGTTGCTCTTAGAGAGATGAAGTCAGACTGGCACTCTTGTCTTGAT AGTAAAGTTGGATTCAAGGGATTTGCCATACCAAAAGAAGCACAAGGCAAAGTGGCTAAGTTCTCATTCCACGGGCAACTGGCAGAGCTCAAGCACGGTA GTGTCGTGATTGCTGCAATCACCAGTTGTACCAACACATCCAACCCAAGTGTCATGCTCGGTGCTGGCCTTGTTGCCAAAAAGGCTTCTGAACTTGGCTT ACATGTCAAGCCTTGGGTCAAAACAAGTCTAGCCCCAGGTTCCGGGGTGGTTACAAAATATTTGCTCAAGAGTGGGTTGCAAGAGTATTTGAACCATCAA GGTTTCAATATTGTCGGATATGGGTGCACAACTTGTATCGGGAATTCTGGAGACATTGATGAATCCGTTGCTGCTGCTATTACAGAAAATGACATCGTGG CCTCGGCTGTGCTTTCTGGAAACAGAAACTTCGAGGGTCGCGTCCATCCCTTGACAAGAGCAAATTACCTTGCCTCACCGCCTTTAGTGGTTGCTTATGC GCTTGCTGGCACAGTCGACATCGATTTCGATAAAGAGCCCATCGGAAAAGGCAAGGACGGAAAGGATGTGTATTTCAGGGATATCTGGCCATCTACAGAA GAAGTTGCACAGGCTGTCCAATCCAGCGTGTTGCCTGAAATGTTTCGAAGCACATACGAAGCCATCACAAAGGGAAATCCTATGTGGAATCAGCTAACTG TACCAACAGCATCCTCATACTCGTGGGATCCCAACTCCACCTACATTCACGACCCTCCTTACTTCAAGAACATGACCCTCGATCCCCCCGGTGCTCATGG AGTTAAGGACGCCTACTGTCTACTGAATTTCGGAGACAGCATCACAACCGATCACATCTCACCGGCAGGAAGCATCCACAAGGACAGTCCGGCAGCCAAG TTCCTCCTTGACCGAGGTGTTGACCGCAGGGACTTCAACTCCTACGGAAGTCGACGTGGTAACGATGAAATCATGGCAAGGGGAACCTTCGCTAACATCC GCCTTGTTAACAAGCTTTTGAACGGCGAAGTTGGTGCCAAGACAGTTCACATCCCCACCGGCGAGAAACTCTACGTGTTCGACGCTGCATCAAAATACAA GAATGAAGGACATGACACTATCATTCTAGCTGGAGCAGAGTATGGAAGTGGAAGCTCCAGAGATTGGGCTGCTAAGGGTCCAATGCTATTGGGAGTCAAA GCAGTGATTGCGAAGAGCTTTGAGAGAATCCACCGCAGCAACTTGGTGGGAATGGGAATAATCCCACTCTGCTTCAAGGCTGGCCAGGATGCAGACAGCC TAGGCTTAACTGGTCACGAACGGTACACAATCGATCTTCCGAGCAACATCAGCGAGATAAGACCTGGCCAAGACGTAACTGTCACAACCGATAACGGGAA ATCTTTCACCTGCACTGTCCGATTCGACACAGAGGTGGAGCTAGCTTACTTCAACCATGGAGGAATTCTACCATATGTGATCCGCAACCTGATGAAGAAA CAGTGA
AA sequence Show only first row Show all	>Lus10015116 pacid=23149581 polypeptide=Lus10015116 locus=Lus10015116.g ID=Lus10015116.BGIv1.0 annot-version=v1.0 MYINGSATSAASSLLRRASRSTPRNASSFSSPAASTSSTPKLSSPVSGFSRQQHRSLSSSAAVRSLSRWSHGFSWLSHVSVRAHTRAVSIPVIEQFQRKL ATMASEHPFKEIFTSLPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVTKEDVEKIADWENLSPKQVEIPFKPARVLLQDFTGVPAV VDLASMRDAMGNLGGDQKKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSTAFDNMLVVPPGSGIVHQVNLEYLGRVVFNKDG VMYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLQNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMSKLSLADRA TIANMSPEYGATMGFFPVDHVTLDYLKLTGRSDETVSMIESYLRANKMFVDYNEPLIERVYSSYLQLDLSEVEPCISGPKRPHDRVALREMKSDWHSCLD SKVGFKGFAIPKEAQGKVAKFSFHGQLAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKASELGLHVKPWVKTSLAPGSGVVTKYLLKSGLQEYLNHQ GFNIVGYGCTTCIGNSGDIDESVAAAITENDIVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGKGKDGKDVYFRDIWPSTE EVAQAVQSSVLPEMFRSTYEAITKGNPMWNQLTVPTASSYSWDPNSTYIHDPPYFKNMTLDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAK FLLDRGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGAKTVHIPTGEKLYVFDAASKYKNEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVK AVIAKSFERIHRSNLVGMGIIPLCFKAGQDADSLGLTGHERYTIDLPSNISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLMKK Q

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05710		ACO3	aconitase 3 (.1)		Lus10015116 [exp]	0	1
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10001251 [exp]	2.0	0.7749
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	4.2	0.7840
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10038006 [exp]	8.4	0.7748
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	13.0	0.7989
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	13.3	0.7919
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	15.9	0.7531
AT3G19780			unknown protein		Lus10040970 [exp]	18.7	0.7577
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	19.0	0.7682
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	25.3	0.7265
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	25.9	0.7690

Compare expression of checked genes

Lus10015116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.