Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32400 916 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT1G05200 800 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT1G42540 794 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 765 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G32390 761 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G17260 749 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT4G35290 743 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT5G11210 419 / 2e-132 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT5G27100 410 / 3e-128 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29110 407 / 7e-127 ATGLR2.8 glutamate receptor 2.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031560 [exp] 1721 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10039672 [exp] 1340 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 1321 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027171 [exp] 839 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 829 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10012245 [exp] 805 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 752 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10026552 [exp] 718 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 710 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G229900 [exp] 1167 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.014G152200 [exp] 825 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G253800 [exp] 823 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 813 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G230000 [exp] 803 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G007400 [exp] 795 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 793 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102600 [exp] 745 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.018G012600 [exp] 462 / 2e-147 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 460 / 2e-146 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10015118 pacid=23149490 polypeptide=Lus10015118 locus=Lus10015118.g ID=Lus10015118.BGIv1.0 annot-version=v1.0 ATGGAGCTGCTGGGGTTTATTATTCTCATGTTTGTTCTTAATCCTGGGTTGGTTTGCTGTGAGAGGCCTGCTTCAGTGAATATTGGTGCGGTTTTCACTT TCGATTCGGTGATTGGGAGGGCTGCAAGGCCAGCCATAGCTGCTGCTGTCTCTGATGTTAATAAGGATTCTAGGGTTCTTAGTGGGACACAGCTCAATTT GATGATGGAGGATGCTAATTGCAGTGTTTTCTATGGCTCAGTTGTAGGTGGTTTGAAACCTTTCATGTCAACCAAAGCTATCATCTTGGTTGACTTGGAA GTTCAAAAACCTTGTTGGCTAATCGCTCTAATTCTCAACTTCCCTTTGTTATCAGCTCTCCGGATGATAGAGAGACAAGTAGTAGCCATGATCGGACCAC AATCATCAGGAATAGCTCACATGGTTTCTCAAGTTGCAAACGGTCTACAAGTCCCTCTAATCTCATACGCCGCAACGGATCCAACTCTATCAGCTCTCCA GTTCCCGTACTTCGTACGAACCACCCTAAGCGACTCTTATCAGATGGCCGCCCTGGCAGACCTGGTCGAATTCCACGGCTGGAAAGAGGTCATTGTGATC TTTACAGACAACGACCACGGCAGAAATGGTGTATCATCTTTAGAGGATCAGCTGAACCAAAGAATGATCAAAATCTTCTACAAGATGAGTTTAAGAGCCC GGTTCAACGACAATGATGTCATGGATGTTCTGAACAATACCAAGCTACTAGGCCCCCGAGTCTACATCGTTCATTCCTATCAAGATCCTGACTTGAGGAT CTTCAAAATGGCTAAGAAGCTCGAAATGATGACCACGAATTTCGTCTGGCTCGCCACGGATTGGCTGGCGACCACATTGGACTCGTTCACTCCTTTGCAG CGAGGATCGCTGCTGAATCTCGTTCGAGGGGTTGTTGGCTTGCGACAACATACTCCCAAGTCGACAAAGATGATATCTTTCATGTCTAGATGGAAAGAAA TGCAGAGAAAAGGGATGGCAGTCTCGGAGCTTAACGCGTACGGGTTTCAAGCTTACGATACGGTTTGGCTACTTGCGTACGCAATTGATAAGTTCATCAA CGAAGCCAACAACTTCACCTTCTCAGCAAGAGAACGCCTTGTTGATACAGATAAGTCTGCATTCCAGCTCGGGCAGCTTAAGATCTTTAACGGCGGAACT GATCTCCGTAGGATTATATTGCAGATGAACTTCACAGGTGTAAGTGGTCATGTTCAGTTCAATGCTGACCGGAACGTGTTGAACCGTGGCTATGACATCA TCAATGTGAACAATAACTTGTCTGTTCATACAGTTGGATATTGGGGGAATACATCTGGGTTTCAACTTATACCCCCCGAGGATCGGAAAGATGGAATCTT TACTAGGGAAGAGATGAAGCTGAAGAGTGTGACATGGCCGGGAGGGAAGACAGAAATGCCACGCGGTTGGGTGATTGCTAACAACGAAAGGCCGTTAAGG ATTGGAGTTCCTAACAGAAGAAGCTTTGTTCAGTTTGTTACTGAAGAGACTAATAGCCATAAGGTTGAAGGGTATTGTATAGATGTGTTTCTCGAAGCTA CGAAATTAGTGCCGTATGATGTCCCTTATACCCTCATTCCTTTCGGAGATGGCCACTCGAATCCTGGTTATGACAACCTCGTACAAAAAGTTGCAGCAAA TGTGTTTGATGCTGCAATAGGGGACATTGCCATCGTGACTAACCGGACAAAGATAGTCGATTTCTCGCAGCCTTATGTGGCTACTGGTCTCGTGGTTGTA GCTCCGGTCAGGAGCTTGAAAGCAAATGCTTGGGTGTTTCTGAAACCGTTTACCGTGGAGATGTGGTGTGTTACTGCAGCTTCGTTTCTTGTTATAGCCG TGGTTATCTGGTTGCTCGAGCATCGTGTGAATGATGACTTCAGAGGTCCCCCGAAACGCCAAATTGTGACAATGCTCATGTTCAGCTTCACGACACTTTT CAAGACAAACCAGGAAACAACTAAAAGTCCACTAGGAAAGATGGTCATGGTGGTATGGCTTTTCTTACTGATGGTGGTAACTGCAAGCTACACGGCCAGC TTGACTTCAATCCTCACGGTTCAGCAGCTTTTGTCTCCTATTACCGGAATCGACAGCTTGGTTGCTAGCAATTGGCCGGTTGGATACCAAGTAGGCTCTT ACGCGTATGGCTATCTCACAGAGTCTCTCCACATTCCGCCATCCAGACTCAAGTATCTACGCAACCCGGAAGAGTACGAGGCTGCGTTGAGGAAAGGGCC TAGCAACGGAGGAGTTGCAGCAATAGTGGATGAGCTTCCATATGTAGAATTGTTTCTTGCGAATCGGACTGATTTTGGAATCATTGGCCAAGCTTTCACC AGAGCTGGATGGGGATTCGCATTCCAGAAAGACTCTCCTCTCACAATCGACATCTCCACCGCAATCCTGAAGCTCTCCGAGAACGGACAGCTACAGAGCA TCCACGACAGGTGGTTCTGCAGCAAAGGATGCCCCGGAGACCATCAGAGGCAAAGCGAGCCAAACCAGCTCAACCTGATCAGTTTCTGGGGACTATACCT TCTCTGCGGTGTCGTCTCTTTAGCCGCATTGCTGATATACACGGTGCGAATGATCCGACAGTTTGCCATTTACAAACACAGGCAGCTGCAGATAATTGCT TCCTCCCCATCTGCAGCCTCGACGACGACAACTACTACTCGGTGCTGCTGCGAAGTGGCCTACAACTTCTTCGAGTTCGTCGACAAGAAGGAAGAGGCCA TCAAGAAGATGTTTAAAGAGTGCGAATTCGAACATCCTCAGCCGCAGACTATGAGCATGGAGAGGTAG
AA sequence Show only first row Show all	>Lus10015118 pacid=23149490 polypeptide=Lus10015118 locus=Lus10015118.g ID=Lus10015118.BGIv1.0 annot-version=v1.0 MELLGFIILMFVLNPGLVCCERPASVNIGAVFTFDSVIGRAARPAIAAAVSDVNKDSRVLSGTQLNLMMEDANCSVFYGSVVGGLKPFMSTKAIILVDLE VQKPCWLIALILNFPLLSALRMIERQVVAMIGPQSSGIAHMVSQVANGLQVPLISYAATDPTLSALQFPYFVRTTLSDSYQMAALADLVEFHGWKEVIVI FTDNDHGRNGVSSLEDQLNQRMIKIFYKMSLRARFNDNDVMDVLNNTKLLGPRVYIVHSYQDPDLRIFKMAKKLEMMTTNFVWLATDWLATTLDSFTPLQ RGSLLNLVRGVVGLRQHTPKSTKMISFMSRWKEMQRKGMAVSELNAYGFQAYDTVWLLAYAIDKFINEANNFTFSARERLVDTDKSAFQLGQLKIFNGGT DLRRIILQMNFTGVSGHVQFNADRNVLNRGYDIINVNNNLSVHTVGYWGNTSGFQLIPPEDRKDGIFTREEMKLKSVTWPGGKTEMPRGWVIANNERPLR IGVPNRRSFVQFVTEETNSHKVEGYCIDVFLEATKLVPYDVPYTLIPFGDGHSNPGYDNLVQKVAANVFDAAIGDIAIVTNRTKIVDFSQPYVATGLVVV APVRSLKANAWVFLKPFTVEMWCVTAASFLVIAVVIWLLEHRVNDDFRGPPKRQIVTMLMFSFTTLFKTNQETTKSPLGKMVMVVWLFLLMVVTASYTAS LTSILTVQQLLSPITGIDSLVASNWPVGYQVGSYAYGYLTESLHIPPSRLKYLRNPEEYEAALRKGPSNGGVAAIVDELPYVELFLANRTDFGIIGQAFT RAGWGFAFQKDSPLTIDISTAILKLSENGQLQSIHDRWFCSKGCPGDHQRQSEPNQLNLISFWGLYLLCGVVSLAALLIYTVRMIRQFAIYKHRQLQIIA SSPSAASTTTTTTRCCCEVAYNFFEFVDKKEEAIKKMFKECEFEHPQPQTMSMER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	0	1
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	2.8	0.8801
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	4.2	0.8573
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	4.9	0.8442
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	10.1	0.8373
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	12.5	0.8178
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	14.7	0.8520
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	18.4	0.8424
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	20.1	0.8305
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10028646 [exp]	20.1	0.7959
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	20.3	0.8070

Compare expression of checked genes

Lus10015118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.