Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21700 301 / 2e-102 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT5G54840 248 / 7e-82 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT5G03530 67 / 4e-13 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT2G44610 65 / 2e-12 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT5G59150 61 / 7e-11 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT1G07410 59 / 3e-10 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT3G07410 58 / 7e-10 AtRABA5b RAB GTPase homolog A5B (.1) AT1G09630 58 / 9e-10 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT4G39890 57 / 1e-09 AtRABH1c RAB GTPase homolog H1C (.1) AT3G46830 57 / 2e-09 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031559 [exp] 429 / 3e-153 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10039670 [exp] 353 / 2e-123 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10027172 [exp] 344 / 1e-119 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10019615 [exp] 258 / 1e-85 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10040044 [exp] 257 / 3e-85 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10014409 [exp] 64 / 5e-12 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10019501 [exp] 64 / 9e-12 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 64 / 9e-12 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10001026 [exp] 62 / 2e-11 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G152100 [exp] 313 / 7e-108 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.011G136300 [exp] 287 / 2e-97 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.001G420700 [exp] 284 / 4e-96 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.002G135500 [exp] 65 / 2e-12 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 64 / 3e-12 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.006G121400 [exp] 64 / 6e-12 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.010G229600 [exp] 64 / 9e-12 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G097800 [exp] 61 / 6e-11 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G000400 [exp] 60 / 2e-10 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.002G249500 [exp] 58 / 1e-09 AT1G05810 333 / 8e-117 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Lus10015119 pacid=23149578 polypeptide=Lus10015119 locus=Lus10015119.g ID=Lus10015119.BGIv1.0 annot-version=v1.0 ATGGGTCGATCGAAATCCAACGTGAGCCGTAAAATCCACCGCCGCCTGTCCATCCTCCGCCGCTGCATTCTCCGGGTATGGCGCCACATCATGATGTGCT CCATCGGCAAGCCCGTCAAGTACCGAATGCTATCCCTTCCTTCGATCCCCAAGCCCACCACCGGAGGAATCGTAATCCCTCCTCCGCCGCAGCCGTCGTC GTCGTCCTCCGCCGCGGTTATTCAAAATTACAACAGCGGCGGCGGTGGGAGAATCAGTCGGGGCGATTCGGATTTGGTCGCGTTGAAGATTAGCCTCCTG GGTGATTCCCAGATTGGGAAAACAAGCTTTCTGGCGAATTTCGTCGGCGGCGGAGAAACAAGCGGAGAAGAAATTACAGGGGAAGAAGAAGAAGAAGGGC TGAATCTGATGGATAAAGTATTGGAAGTCGGAGGAGCTCGGATTTCTTACAGTCTATGGGAAGTTGACGGCGGGGAGCAGTCGAAGGAGCAGATTCCGGC GGCCTGTAAAGACTCGGTGGCGATCCTTATCATGTTTGATCTCACCAGTCGGGTCACTCTTAACGGAGTGATGAAATGGTACCAAGAGGCAAGGAAATGG AATCAGACGGCAATACCAATTTTGATAGGAACAAAGTTCGACGACTTCATCCAGCTTCCCATTGATCTACAGTGGACAATTGCTAGCCAGGCGAGAGCGT ACGCCAAGGCATTAAACGCGACACTGTTCTTCTCGAGCGCAACGTACAACATCAATGTGAATAAGATCTTCAAGTTCGTAACGGCTAAGCTCTTCGATCT GCCATGGACCGTGGAGCGAAACCTCACCATCGGAGAGCCAATTATTGATTTCTGA
AA sequence Show only first row Show all	>Lus10015119 pacid=23149578 polypeptide=Lus10015119 locus=Lus10015119.g ID=Lus10015119.BGIv1.0 annot-version=v1.0 MGRSKSNVSRKIHRRLSILRRCILRVWRHIMMCSIGKPVKYRMLSLPSIPKPTTGGIVIPPPPQPSSSSSAAVIQNYNSGGGGRISRGDSDLVALKISLL GDSQIGKTSFLANFVGGGETSGEEITGEEEEEGLNLMDKVLEVGGARISYSLWEVDGGEQSKEQIPAACKDSVAILIMFDLTSRVTLNGVMKWYQEARKW NQTAIPILIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNINVNKIFKFVTAKLFDLPWTVERNLTIGEPIIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10015119 [exp]	0	1
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	3.0	0.8115
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	14.5	0.7314
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	17.5	0.7005
AT5G27920			F-box family protein (.1)		Lus10011626 [exp]	19.6	0.5783
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	23.9	0.7102
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	31.5	0.7011
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10000243 [exp]	32.9	0.7146
AT2G35200			unknown protein		Lus10036051 [exp]	33.2	0.6975
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	35.5	0.6871
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	35.9	0.6659

Compare expression of checked genes

Lus10015119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.