Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46150 56 / 9e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G64065 52 / 4e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT3G54200 49 / 4e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G44000 46 / 3e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 45 / 4e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031554 [exp] 342 / 7e-122 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 150 / 8e-46 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 148 / 5e-45 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 144 / 1e-43 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 135 / 6e-40 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 127 / 4e-37 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10040941 [exp] 124 / 3e-35 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039665 [exp] 102 / 5e-27 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009831 [exp] 100 / 9e-26 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 113 / 1e-31 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 90 / 1e-22 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 63 / 2e-12 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 60 / 5e-11 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 57 / 3e-10 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 55 / 3e-09 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 52 / 3e-08 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 49 / 5e-07 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G141200 [exp] 46 / 4e-06 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G112700 [exp] 43 / 3e-05 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10015120 pacid=23149510 polypeptide=Lus10015120 locus=Lus10015120.g ID=Lus10015120.BGIv1.0 annot-version=v1.0 ATGGGGCTCGAAAACCGAGGTTCGAGGGTTAGAGGCATGTACGTATGCGCAATAACGACGACGATCCTCGTTGGGATCGCCTTCGTTGCAATAGCCCTAG GGCTCACGGTCTTTAGGCCCAGAGACCCCTATGTCGCGGTCTACATGGTGGGCCTGAAGGACCACAGCATAACCGACTTTGTGTTCGCGACGAGTAACGT GTCGACCGCGATGATCATATCCATAGACAATGGGAACTATGCAGGTTTCAAGTACGACAATGCGACTAGCCTGATCCGGTACAACGGTACGGTCGTGGGG GAGGTCCGTATCGAGGGGAAAGAGGTCGCGGCTCGCTCGCAGGTGAATGTGACCACGGCGGCCATCCTGAATGCGCCCGTGTTGATGGCGAAGTCAGTCA ATGAGATCTCGTTGGGGAAGCTGAACCTGACCTCGAGCGTGACACTGCAAGGGAGGTCGACGTTGTTGGGGGTCAAGGTGAGGGCTTTGGCACATACGGA GTGTAACATGACTCTCGTGTTGGGGGAGGTGTTGAGTGGGAATAGCTCGTGTTGGAGTAGGCTCAAGATTGAATGA
AA sequence Show only first row Show all	>Lus10015120 pacid=23149510 polypeptide=Lus10015120 locus=Lus10015120.g ID=Lus10015120.BGIv1.0 annot-version=v1.0 MGLENRGSRVRGMYVCAITTTILVGIAFVAIALGLTVFRPRDPYVAVYMVGLKDHSITDFVFATSNVSTAMIISIDNGNYAGFKYDNATSLIRYNGTVVG EVRIEGKEVAARSQVNVTTAAILNAPVLMAKSVNEISLGKLNLTSSVTLQGRSTLLGVKVRALAHTECNMTLVLGEVLSGNSSCWSRLKIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46150			Late embryogenesis abundant (L...		Lus10015120 [exp]	0	1

Compare expression of checked genes

Lus10015120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.