Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03800 277 / 6e-93 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 259 / 9e-86 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT1G11250 212 / 1e-67 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT1G61290 204 / 2e-64 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT4G03330 203 / 5e-64 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G11820 194 / 3e-60 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 187 / 2e-57 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G08560 154 / 6e-45 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 123 / 4e-33 ATSYP112, SYP112 syntaxin of plants 112 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031553 [exp] 457 / 7e-164 AT3G03800 347 / 4e-120 syntaxin of plants 131 (.1) Lus10010655 [exp] 268 / 1e-89 AT3G03800 432 / 6e-154 syntaxin of plants 131 (.1) Lus10006735 [exp] 207 / 1e-65 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10013589 [exp] 202 / 1e-63 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 202 / 5e-63 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10018441 [exp] 201 / 6e-63 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10020089 [exp] 202 / 7e-63 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10011244 [exp] 198 / 6e-62 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10029373 [exp] 194 / 4e-60 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123000 [exp] 347 / 1e-119 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.019G036700 [exp] 285 / 6e-96 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.004G035400 [exp] 213 / 9e-68 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.011G043700 [exp] 211 / 2e-67 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.013G053200 [exp] 202 / 3e-63 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 197 / 1e-61 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.016G068600 [exp] 193 / 3e-60 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.006G202200 [exp] 192 / 6e-60 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.007G023100 [exp] 147 / 3e-42 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 136 / 3e-38 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10015121 pacid=23149570 polypeptide=Lus10015121 locus=Lus10015121.g ID=Lus10015121.BGIv1.0 annot-version=v1.0 ATGAACGACCTGCTCACGGACTCGTTTGTGGGTCAAACCAACCGGGGACAGAACAATGATATCGAAATGGGAGTGCAAAGTCCCAGTCCTAGTCAGAGCT CCAGGAGTATCTCTGATATGGGAATGGGAAGTTTCAACAAGCAGATACAAGAAGTCGAGAAAAATGTCGACAAAGTTGCTGGCCTGCTGAAGAGTTTGAA GGATGCTAACGAGGAGTCGAAGACTGTCACGAAAGCTTCGGCTATGAAAGCCATCAAGAAGCGAATGGAGAAGGACATCGACGAAGTTGGCAAGACAGCA CGTTTCGTCAAAGCCAAACTCGAAGCAATAAACAAAGATAACTTAGCAAATCGGCAGAAGCCTGGCTGCGAGAAGGGTACCGGTGTTGACAGAGCTAGGA TGAATGTTACAAATTCGTTAACGAAGAAGTTTAGAGATCTGATGACTGAGTTTCAGACCCTAAGGCAAAAGATACAAGACGAATATCGTGAGGTTGTCGA GCGAAGAGTCATGACAGTTACTGGAGCTAAACCGGATGAAGAGACAATCGACCAACTGATTGAAACGGGAGACAGTGAGCAGATCTTTCAAAATGCGATC CAAGAAATGGGTCGAGGACAGGTGCTGAACACGGTGCAAGAAATCCACGAGAGGCATGATGCGGTGAAGGAAATCGAAAAGAAGCTCCTCGACTTACACC AAATATACCTTGACATGGCTGTACTCGTCGAGGCTCAGGGAGAGATACTAGACAACATCGAGAACCAGAGGTATAAGTATTTGATTGGAGGGGTTGTTAG AATTCATTTCGGTGCAATTTACGGAGTTTCGTGTTGGTTGGACAAGGTTCGTGATGAGTAG
AA sequence Show only first row Show all	>Lus10015121 pacid=23149570 polypeptide=Lus10015121 locus=Lus10015121.g ID=Lus10015121.BGIv1.0 annot-version=v1.0 MNDLLTDSFVGQTNRGQNNDIEMGVQSPSPSQSSRSISDMGMGSFNKQIQEVEKNVDKVAGLLKSLKDANEESKTVTKASAMKAIKKRMEKDIDEVGKTA RFVKAKLEAINKDNLANRQKPGCEKGTGVDRARMNVTNSLTKKFRDLMTEFQTLRQKIQDEYREVVERRVMTVTGAKPDEETIDQLIETGDSEQIFQNAI QEMGRGQVLNTVQEIHERHDAVKEIEKKLLDLHQIYLDMAVLVEAQGEILDNIENQRYKYLIGGVVRIHFGAIYGVSCWLDKVRDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10015121 [exp]	0	1
AT5G61530			small G protein family protein...		Lus10042986 [exp]	1.4	0.8645
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	2.4	0.8569
AT5G16110			unknown protein		Lus10009170 [exp]	5.2	0.8385
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	5.9	0.8186
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	8.5	0.8034
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	9.6	0.7893
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	9.8	0.8245
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	12.0	0.7676
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	13.3	0.7710
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	16.7	0.8164

Compare expression of checked genes

Lus10015121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.