Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17880 214 / 4e-72 ATBTF3 basic transcription factor 3 (.1) AT1G73230 199 / 3e-66 Nascent polypeptide-associated complex NAC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031551 [exp] 253 / 7e-88 AT1G17880 255 / 2e-88 basic transcription factor 3 (.1) Lus10039661 [exp] 238 / 2e-81 AT1G17880 253 / 2e-87 basic transcription factor 3 (.1) Lus10027180 [exp] 201 / 5e-67 AT1G17880 238 / 1e-81 basic transcription factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078300 [exp] 230 / 1e-78 AT1G73230 197 / 2e-65 Nascent polypeptide-associated complex NAC (.1) Potri.017G141100 [exp] 221 / 4e-75 AT1G73230 196 / 3e-65 Nascent polypeptide-associated complex NAC (.1) Potri.015G029800 [exp] 185 / 1e-60 AT1G17880 232 / 4e-79 basic transcription factor 3 (.1) Potri.012G037900 [exp] 181 / 3e-59 AT1G73230 225 / 1e-76 Nascent polypeptide-associated complex NAC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Lus10015123 pacid=23149603 polypeptide=Lus10015123 locus=Lus10015123.g ID=Lus10015123.BGIv1.0 annot-version=v1.0 ATGAATCGGGAGAAGCTAATGAAGATGGCCGGCTCCGTTCGTACCGGAGGAAAGGGAACCGTCCGAAGAAAGAAGAAGGCTGTCCACAAATCGACCACCA CCGACGATAAGAAGCTTCAGAACACACTGAAGAGGATAGGTGTCAACACCATCCCGGCTATTGAAGAAGTCAACATCTTTAAGGATGATTTGGTGATTCA GTTTGTTAACCCTAAAGTTCAGGCCTCAGTTGTTGCCAACACTTGGGTTATCACTGGTTCTCCTCAGACCAGAAAACTTCAAGATATTCTTCCAGGAATC ATCAACCAGCTTGGTCCGGACAACTTGGACAACCTCAAGAAGTTGGCTGAGCAGTTCCAAAAGGAGGCTCCAGGGGCTACCTTGGGAGCAGTCCAGGAGG AAGATGATGATGATGTCCCGGAACTCGTAGCAGGGGAGACATTTGAAGCTGCAGCAGCAGAAGAAACTAAAGCTTAA
AA sequence Show only first row Show all	>Lus10015123 pacid=23149603 polypeptide=Lus10015123 locus=Lus10015123.g ID=Lus10015123.BGIv1.0 annot-version=v1.0 MNREKLMKMAGSVRTGGKGTVRRKKKAVHKSTTTDDKKLQNTLKRIGVNTIPAIEEVNIFKDDLVIQFVNPKVQASVVANTWVITGSPQTRKLQDILPGI INQLGPDNLDNLKKLAEQFQKEAPGATLGAVQEEDDDDVPELVAGETFEAAAAEETKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10015123 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	2.0	0.9719
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	5.3	0.9673
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	5.5	0.9664
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10015579 [exp]	6.7	0.9453
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	8.0	0.9644
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10017648 [exp]	8.8	0.9563
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	8.8	0.9558
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	12.2	0.9563
AT5G20600			unknown protein		Lus10011961 [exp]	13.5	0.9069
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	14.4	0.9456

Compare expression of checked genes

Lus10015123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.