Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05870 156 / 2e-50 APC11 anaphase-promoting complex/cyclosome 11 (.1.2) AT5G20570 69 / 2e-15 HRT1, ROC1, RBX1, ATRBX1 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) AT3G42830 65 / 3e-14 RING/U-box superfamily protein (.1) AT5G26640 56 / 5e-11 unknown protein AT2G38970 41 / 0.0001 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 41 / 0.0002 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G37280 40 / 0.0002 RING/U-box superfamily protein (.1) AT1G72220 40 / 0.0002 RING/U-box superfamily protein (.1) AT3G62690 40 / 0.0003 ATL5 AtL5 (.1) AT5G37230 40 / 0.0003 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031549 [exp] 185 / 1e-59 AT3G05870 158 / 6e-50 anaphase-promoting complex/cyclosome 11 (.1.2) Lus10013153 [exp] 67 / 6e-15 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10015667 [exp] 67 / 8e-15 AT5G20570 200 / 5e-68 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Lus10012745 [exp] 44 / 1e-05 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10011702 [exp] 42 / 0.0001 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10006785 [exp] 41 / 0.0001 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10009511 [exp] 41 / 0.0002 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10006788 [exp] 40 / 0.0004 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10031515 [exp] 40 / 0.0005 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G037701 [exp] 114 / 3e-34 AT3G05870 123 / 5e-39 anaphase-promoting complex/cyclosome 11 (.1.2) Potri.003G067100 [exp] 69 / 6e-16 AT5G20570 206 / 2e-70 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.006G141300 [exp] 68 / 2e-15 AT5G20570 209 / 1e-71 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.001G167400 [exp] 67 / 3e-15 AT5G20570 203 / 3e-69 REGULATOR OF CULLINS-1, RING-box 1 (.1.2.3) Potri.011G147900 [exp] 41 / 8e-05 AT5G47610 123 / 1e-35 RING/U-box superfamily protein (.1) Potri.002G140600 [exp] 41 / 0.0001 AT3G60220 194 / 3e-59 TOXICOS EN LEVADURA 4 (.1) Potri.001G141200 [exp] 41 / 0.0002 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 41 / 0.0002 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.010G228000 [exp] 40 / 0.0002 AT5G03450 357 / 8e-115 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G206200 [exp] 39 / 0.0003 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015126 pacid=23149550 polypeptide=Lus10015126 locus=Lus10015126.g ID=Lus10015126.BGIv1.0 annot-version=v1.0 ATGATGAGCTTTGAAACTTGTTTGTTCTTTAATACCTTGAGTATACCCAACAACTGGGTTCATGTGTGTTTCGATTCCACCGCACTTTCAGGAATTGGAC TTCTCTTGTCGCAAGTAACTGTGCTTGTTTTTGCAGGAAGGAAGCAAGATAATGAAAGTGAAGTTGCTCCCTTTCCCTTGACTGATTTCCCCCTTCTTGA AACCTCTTCTGCTGGGAATATCCAACAGAGTAAGTGGCACGCTGTTGCTTCATGGACTTGGGATGCGAAAGATGAGACCTGCGGGATATGCAGGATGGCT TTTGATGGTTGCTGTAATCATTGTAAACTCCCTGGCGACGATTGCCCTCTCATCTGGGGTCAGTGTAACCATGCTTTCCATCTCCATTGCATCCTGAAAT GGGTGAACTCGCAGACTTCTCAAGCTCACTGCCCTATGTGCCGCGCTGAATGGCAGTTCAAAGACTCATGA
AA sequence Show only first row Show all	>Lus10015126 pacid=23149550 polypeptide=Lus10015126 locus=Lus10015126.g ID=Lus10015126.BGIv1.0 annot-version=v1.0 MMSFETCLFFNTLSIPNNWVHVCFDSTALSGIGLLLSQVTVLVFAGRKQDNESEVAPFPLTDFPLLETSSAGNIQQSKWHAVASWTWDAKDETCGICRMA FDGCCNHCKLPGDDCPLIWGQCNHAFHLHCILKWVNSQTSQAHCPMCRAEWQFKDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	0	1
AT2G45520			unknown protein		Lus10015859 [exp]	3.2	0.8882
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10023781 [exp]	3.9	0.8754
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	4.2	0.8497
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	6.5	0.8859
AT2G35736			unknown protein		Lus10028935 [exp]	6.7	0.8627
AT5G63000			Mitochondrial import inner mem...		Lus10027691 [exp]	8.1	0.8298
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	8.7	0.8701
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	10.1	0.8121
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	10.2	0.8422
AT1G01940			Cyclophilin-like peptidyl-prol...		Lus10009237 [exp]	10.7	0.8285

Compare expression of checked genes

Lus10015126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.