Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 424 / 4e-150 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 413 / 2e-145 Peroxidase superfamily protein (.1) AT3G21770 412 / 5e-145 Peroxidase superfamily protein (.1) AT5G15180 331 / 4e-113 Peroxidase superfamily protein (.1) AT3G01190 324 / 2e-110 Peroxidase superfamily protein (.1) AT1G05250 284 / 1e-94 Peroxidase superfamily protein (.1) AT1G05240 284 / 1e-94 Peroxidase superfamily protein (.1) AT2G39040 265 / 4e-87 Peroxidase superfamily protein (.1) AT2G18150 258 / 2e-84 Peroxidase superfamily protein (.1) AT5G39580 256 / 4e-84 Peroxidase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031548 [exp] 613 / 0 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027164 [exp] 533 / 0 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 516 / 0 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 422 / 8e-149 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 419 / 7e-148 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10018374 [exp] 342 / 2e-117 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 333 / 4e-114 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 324 / 2e-110 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10004163 [exp] 272 / 7e-90 AT5G06720 446 / 1e-158 peroxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122100 [exp] 451 / 1e-160 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 449 / 1e-159 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 424 / 5e-150 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 346 / 4e-119 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 344 / 2e-118 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 342 / 2e-117 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 338 / 3e-116 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 330 / 5e-113 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 330 / 1e-112 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 330 / 1e-112 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10015127 pacid=23149524 polypeptide=Lus10015127 locus=Lus10015127.g ID=Lus10015127.BGIv1.0 annot-version=v1.0 ATGGAGAGAAATTGCTTCATAGTTCTAACCCTCTTGGCCATCATGGCCTTTGGATCAACTGAAGCTCAGCTTAAGATGAACTTCTACTCCAAGAGCTGCC CTAAAGCCGAGCAGATCGTGTCGGATTACGTCAACAAGCACATCCACAATGCCCCTTCCCTCGCCGCCCCTCTTCTCCGGATGCATTTCCACGACTGCTT CGTCAGGGGATGTGATGCTTCGGTGATGTTGAATGTGACGGCGAAAAACAATGCGACGGAGAAGACTGCAGCTCCGAATTTGACCCTCAGAGGGTTCGGC TTTCTTGATGCTATCAAGAAACTGCTCGAGAAAGAATGCCCTGGAGTTGTCTCTTGTGCTGATATCCTTGCTCTGTCTGCTAGAGACTCTGTTGCCTCTA CCGGCGGTCCTACCTGGAGAGTTCCGACAGGGAGGAGGGACGGGAGAATCTCGAACGCTAGTGAGGCGTTGAACGCAATCCCCCCTCCGACTAGCAACTT CACCACCCTCCAGAGGTTGTTTGGGAATGTCGGTCTCAACTTGAAGGACCTTACCCTACTTTCAGCGGCCCACACGATAGGGATATCTCACTGCAACTCG TTCTCCGAGCGGCTATACAACTTCACTGGGCGTGGGAACGGGCAGGACCCGAGACTGGACAACAACTACGCGACCAAGCTGAAGCAAAAGTGCGTGAACA CGAGCGACAACACGACCATCGTGGAGATGGACCCTGGTAGCTTCAGGACTTTCGACCGCAGCTACTTCAAACTGCTCCAAAAGAGGAGAGGGTTGTTCCA ATCCGACGCGGCCCTGACCACGAGCGGGACCACGAAGGCGTTCATCGACCAGTTCGCGTCCGGTTCGATCCAGAACTTCTTCAAGGAGTTCGCATTGTCG ATGGAGAAGATGGGTCGGATCAACGTGAAAACCGGGTCGGCCGGGGAGATCCGGAAGACATGTGCCTTTGTGAATTGA
AA sequence Show only first row Show all	>Lus10015127 pacid=23149524 polypeptide=Lus10015127 locus=Lus10015127.g ID=Lus10015127.BGIv1.0 annot-version=v1.0 MERNCFIVLTLLAIMAFGSTEAQLKMNFYSKSCPKAEQIVSDYVNKHIHNAPSLAAPLLRMHFHDCFVRGCDASVMLNVTAKNNATEKTAAPNLTLRGFG FLDAIKKLLEKECPGVVSCADILALSARDSVASTGGPTWRVPTGRRDGRISNASEALNAIPPPTSNFTTLQRLFGNVGLNLKDLTLLSAAHTIGISHCNS FSERLYNFTGRGNGQDPRLDNNYATKLKQKCVNTSDNTTIVEMDPGSFRTFDRSYFKLLQKRRGLFQSDAALTTSGTTKAFIDQFASGSIQNFFKEFALS MEKMGRINVKTGSAGEIRKTCAFVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	1.0	0.9731
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	1.4	0.9724
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	1.7	0.9716
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	2.2	0.9648
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	2.4	0.9648
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	3.2	0.9610
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	3.3	0.9589
AT5G20950			Glycosyl hydrolase family prot...		Lus10001151 [exp]	3.6	0.9565
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	4.2	0.9614
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	7.3	0.9468

Compare expression of checked genes

Lus10015127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.