Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 238 / 7e-80 RmlC-like cupins superfamily protein (.1) AT5G39190 234 / 2e-78 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 234 / 2e-78 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 233 / 1e-77 RmlC-like cupins superfamily protein (.1) AT5G39110 231 / 3e-77 RmlC-like cupins superfamily protein (.1) AT5G39120 228 / 4e-76 RmlC-like cupins superfamily protein (.1) AT5G39150 228 / 4e-76 RmlC-like cupins superfamily protein (.1) AT5G39180 228 / 8e-76 RmlC-like cupins superfamily protein (.1) AT4G14630 227 / 2e-75 GLP9 germin-like protein 9 (.1) AT3G04200 225 / 9e-75 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026962 [exp] 327 / 6e-115 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 327 / 1e-114 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 324 / 8e-114 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 320 / 4e-112 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 317 / 6e-111 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 317 / 6e-111 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032015 [exp] 314 / 7e-110 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10034254 [exp] 314 / 1e-109 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 312 / 5e-109 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 302 / 2e-105 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 302 / 2e-105 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 302 / 3e-105 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 294 / 3e-102 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 294 / 3e-102 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 288 / 7e-100 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 285 / 2e-98 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 274 / 4e-94 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 269 / 3e-92 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052000 [exp] 262 / 3e-89 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10015128 pacid=23149544 polypeptide=Lus10015128 locus=Lus10015128.g ID=Lus10015128.BGIv1.0 annot-version=v1.0 ATGGACAACCAAGTCCTTCTGTTAAGCCTATTGACGGCATTCTGTTTCTTCCGCATCACATTTGCCTCCGACCCTGCTTCAGTCCAGGACTTCTGTGTGG CTGATGTCAACAACCAAGTGAAACTAAACGGGTTCGTTTGCAAGGACCCTGCGTGGGTCCAGGCAAACGACTTCTCCTTCAGCGGGATGCATATTTCCGG AAACACGGGAAACTCTCTTGGATCATTTGTCACTCCCATGACTGTAGCTCAAATTCCCGGGCTCAACACTTTGGGCATCTCGATGGCTCGGATCGACTAT GCTCCTTGGGGTGTCGTCCCGCCCCACTACCATCCTAGAGCGAGCGAAATCATCACGGTCATCGAGGGCGCTCTGGAAGTTGGGTTCGTGACGTCGAACC CTGAGAATAGGTTGATTTCCAAGACTCTTCAAAAGGGTGACGCATTTGTTTTTCCTGTCGGGTTGATTCACTTCCAGTGTAACGTTGGGCAGACGAATGC GGTGGTCATTGCTGCCTTGAGTAGCCAAAACCCTGGAGTCGTCACCGTCGCTAATGCTGTGTTCGGACCGAAACCTGACATTGCGACCGACGTTCTTGCT AGGGCGTTCCAGGTGGACAAGAGTATCGTGCAACAACTACAATCGAAGTTCTAA
AA sequence Show only first row Show all	>Lus10015128 pacid=23149544 polypeptide=Lus10015128 locus=Lus10015128.g ID=Lus10015128.BGIv1.0 annot-version=v1.0 MDNQVLLLSLLTAFCFFRITFASDPASVQDFCVADVNNQVKLNGFVCKDPAWVQANDFSFSGMHISGNTGNSLGSFVTPMTVAQIPGLNTLGISMARIDY APWGVVPPHYHPRASEIITVIEGALEVGFVTSNPENRLISKTLQKGDAFVFPVGLIHFQCNVGQTNAVVIAALSSQNPGVVTVANAVFGPKPDIATDVLA RAFQVDKSIVQQLQSKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	0	1
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	5.3	0.8887
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032211 [exp]	5.5	0.8905
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	6.3	0.9128
AT3G57440			unknown protein		Lus10042062 [exp]	7.9	0.9178
					Lus10003693 [exp]	9.1	0.8030
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	13.0	0.8666
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	15.5	0.9041
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10005117 [exp]	18.0	0.7820
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	20.1	0.8955
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	20.2	0.8951

Compare expression of checked genes

Lus10015128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.