Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39130 242 / 2e-81 RmlC-like cupins superfamily protein (.1) AT5G39110 241 / 5e-81 RmlC-like cupins superfamily protein (.1) AT3G05950 241 / 9e-81 RmlC-like cupins superfamily protein (.1) AT5G39160 239 / 2e-80 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 239 / 3e-80 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39180 235 / 1e-78 RmlC-like cupins superfamily protein (.1) AT5G39120 235 / 1e-78 RmlC-like cupins superfamily protein (.1) AT5G39150 234 / 3e-78 RmlC-like cupins superfamily protein (.1) AT4G14630 224 / 1e-74 GLP9 germin-like protein 9 (.1) AT5G38940 220 / 7e-73 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032015 [exp] 320 / 5e-112 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 315 / 3e-110 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 311 / 1e-108 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 309 / 6e-108 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10026962 [exp] 305 / 4e-106 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 304 / 6e-106 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 300 / 2e-104 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 303 / 4e-104 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10030047 [exp] 299 / 7e-104 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 307 / 2e-107 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 307 / 3e-107 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 305 / 3e-106 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 293 / 2e-101 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 291 / 4e-101 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 289 / 5e-100 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 268 / 1e-91 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 253 / 9e-86 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 252 / 2e-85 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052100 [exp] 247 / 3e-83 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10015129 pacid=23149529 polypeptide=Lus10015129 locus=Lus10015129.g ID=Lus10015129.BGIv1.0 annot-version=v1.0 ATGATGAATCCGGTCGTTTTCTTGTGCTTTGGAGCTCTGATACTCACCTGTGCGCATCTGGCATCGGCAAGTGACCCCGCCTCCCTCCAGGATTTCTGCG TTGCGGATGTTGGTGCCGGTGTCGGGATGAACGGTTTCGCTTGTAAGAGCCCTGCCAAGGTCAAGGCGAGCGATTTCCACTTCGGTGGGCTTCACTTGTC GGGAAATACGACGAATGCGGTCGGTTCGAGGGTCACTCTTGTCAGTGTGGCCCAGATTCCGGGGTTGAACACGTTCGGGATCTCGTTGGCTCGTATTGAT TATGCTCCATGGGGGATCAACCCTCTTCACGCTCATCCTCGTGCAAGTGAGATCCTGTTGGTCGTCGAGGGAACTCTCGAAGTTGGGTTCGTTACTTCGA ACCCCGACAACCGTCACATCTACAAAACTCTTAAGAAGGGTGATGTGTTCGTCTTCCCCGTTGGAATGGTCCACTACCAGCGGAACATTGGGCATGGGAA TGCTATGGCCATCGCCGCATTAAGCAGCCAGAACCCTGGAGTCAACACAATTGCCAATGTTGTTTTCGGAGCCAAAGATGATATTCCTGCAGACATTCTT GCCAGGGCGTTCCAGGTTGATAAGAACGTGGTGCAACAACTTCAAGCAAAATTCTAA
AA sequence Show only first row Show all	>Lus10015129 pacid=23149529 polypeptide=Lus10015129 locus=Lus10015129.g ID=Lus10015129.BGIv1.0 annot-version=v1.0 MMNPVVFLCFGALILTCAHLASASDPASLQDFCVADVGAGVGMNGFACKSPAKVKASDFHFGGLHLSGNTTNAVGSRVTLVSVAQIPGLNTFGISLARID YAPWGINPLHAHPRASEILLVVEGTLEVGFVTSNPDNRHIYKTLKKGDVFVFPVGMVHYQRNIGHGNAMAIAALSSQNPGVNTIANVVFGAKDDIPADIL ARAFQVDKNVVQQLQAKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	0	1
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	1.7	1.0000
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	2.0	1.0000
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	3.0	1.0000
					Lus10017294 [exp]	3.5	1.0000
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	3.9	1.0000
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	4.5	0.9572
					Lus10013414 [exp]	4.9	0.7726
					Lus10003941 [exp]	5.3	1.0000
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	5.5	1.0000
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	5.7	1.0000

Compare expression of checked genes

Lus10015129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.