Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11790 434 / 5e-152 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT1G08250 402 / 3e-139 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 397 / 3e-137 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT3G44720 389 / 3e-134 ADT4 arogenate dehydratase 4 (.1) AT3G07630 377 / 7e-130 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT5G22630 377 / 3e-129 ADT5 arogenate dehydratase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031547 [exp] 746 / 0 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10019526 [exp] 422 / 2e-146 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10043369 [exp] 421 / 3e-146 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10020549 [exp] 409 / 8e-142 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 407 / 4e-141 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10015561 [exp] 374 / 5e-129 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10036135 [exp] 367 / 4e-126 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10018128 [exp] 364 / 3e-124 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10020035 [exp] 360 / 2e-123 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004700 [exp] 466 / 8e-165 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 462 / 4e-163 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G188100 [exp] 409 / 1e-141 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 407 / 7e-141 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.008G195500 [exp] 399 / 2e-138 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10015130 pacid=23149568 polypeptide=Lus10015130 locus=Lus10015130.g ID=Lus10015130.BGIv1.0 annot-version=v1.0 ATGGCAGTGAAGTCCTTTCCCGCCGTGGGTTGTGTTGCTTCTTGGCCGAGACTCGGTGGAACACATTCTAAACCGGCGGCTCATGGGTCGGCGTCCTTTG CCGCAATAAGATCGGAAATGGTGGATCAGAACAAGATAGTGAGTGATGTTTCCAGGAGCCTACAGAAGGATTTCAGCTCTTTGCCAAGACCATTGACTGT TGCTGATTTTTCCGCCATTCCTGATAATGGCAAACAAATGAGGGTGTCATTCAAGGGGCTGCCTGGTTCATACAGTGAGGAAGCAGCTCTGAAAGCCTAC CCTCAATGTGAGACTGTACCATGTTCTGATTACGAGGATGCTTTCAAGGCGGTTGAGTTATGGCTAGCAGATAAAGCAGTTCTACCGATAGAGAACACTT CCGGTGGAAGCATACATCGGAATTATGATTTACTTCTTCGTCACCGGCTTCATATTGTGAGCGAAGTGCAGTTGGCTTCGGACCTGTGTCTTCTGGCCAT GCCCGGGGTTAGAGTAGGAGAGTTAACACGTGTTCTAAGTCATCCTCAGGCTCTTGCATTGAGTGATACTTTCCTAAGCGAGTTAGGAGTTACTGGAGAG AGTATGAATGATACAGCAACTGCAGCTCAGTACCTTGCTGCAAATGAGCTCAGAGATGCTGGAGTCGTAGCAAGTGCTCGAGCTTCCGAACTATATGGCC TTACCATCCTGGCAGAGAAAATACAGGACGACCCGGATAATGTAACTCGTTATCTGGTTCTTGCAAGAGATCCAATAGTTCCAAGAACTGATAAACCATA TAAGACGAGTGTCGTGTTTACACTGGACGAAGGCCCCGGAGTATTGTTCAAGGCTTTGGCTGTGTTTGCTGGTAGAGATATTAACTTGACAAAGATCGAA AGCCGGCCCCAGAGAAAACGGCCATTGAGAGTTGTTGATGATTCCAACACCGGAATCGCCAAGCATTTTGACTATCTTTTCTACATAGATTTCGAGGCTT CCATGGCCGAGCCTCGAGCCCAGAATGCTTTAGGCAATCTGCAGGAGTTCGCGACATTTCTTCGTGTGCTTGGCTGCTACCCAATGGACACTACTATTCC ATAG
AA sequence Show only first row Show all	>Lus10015130 pacid=23149568 polypeptide=Lus10015130 locus=Lus10015130.g ID=Lus10015130.BGIv1.0 annot-version=v1.0 MAVKSFPAVGCVASWPRLGGTHSKPAAHGSASFAAIRSEMVDQNKIVSDVSRSLQKDFSSLPRPLTVADFSAIPDNGKQMRVSFKGLPGSYSEEAALKAY PQCETVPCSDYEDAFKAVELWLADKAVLPIENTSGGSIHRNYDLLLRHRLHIVSEVQLASDLCLLAMPGVRVGELTRVLSHPQALALSDTFLSELGVTGE SMNDTATAAQYLAANELRDAGVVASARASELYGLTILAEKIQDDPDNVTRYLVLARDPIVPRTDKPYKTSVVFTLDEGPGVLFKALAVFAGRDINLTKIE SRPQRKRPLRVVDDSNTGIAKHFDYLFYIDFEASMAEPRAQNALGNLQEFATFLRVLGCYPMDTTIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015130 [exp]	0	1
AT1G14810			semialdehyde dehydrogenase fam...		Lus10013239 [exp]	1.7	0.8072
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	5.8	0.8328
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10025607 [exp]	18.5	0.7920
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	28.8	0.7939
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	34.3	0.7978
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	36.2	0.7627
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	44.4	0.7877
					Lus10032893 [exp]	70.9	0.7330
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10003862 [exp]	73.0	0.7308
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001372 [exp]	82.6	0.7756

Compare expression of checked genes

Lus10015130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.