Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62280 339 / 5e-114 SLAH1 SLAC1 homologue 1 (.1) AT1G62262 325 / 1e-108 SLAH4 SLAC1 homologue 4 (.1) AT4G27970 207 / 3e-61 SLAH2 SLAC1 homologue 2 (.1) AT5G24030 208 / 9e-61 SLAH3 SLAC1 homologue 3 (.1) AT1G12480 198 / 1e-57 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024306 [exp] 322 / 1e-107 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1) Lus10031545 [exp] 298 / 4e-101 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1) Lus10027553 [exp] 222 / 5e-66 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1) Lus10039312 [exp] 220 / 4e-65 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10007023 [exp] 197 / 3e-57 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10006678 [exp] 197 / 5e-57 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114300 [exp] 169 / 2e-48 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Potri.015G026700 [exp] 157 / 3e-45 AT5G24030 367 / 3e-124 SLAC1 homologue 3 (.1) Potri.002G227800 [exp] 150 / 1e-41 AT1G62280 120 / 7e-31 SLAC1 homologue 1 (.1) Potri.010G170050 [exp] 119 / 7e-32 AT1G62280 136 / 7e-39 SLAC1 homologue 1 (.1) Potri.008G084901 [exp] 109 / 1e-28 AT1G62280 117 / 3e-32 SLAC1 homologue 1 (.1) Potri.015G026801 [exp] 56 / 2e-08 AT5G24030 223 / 4e-68 SLAC1 homologue 3 (.1) Potri.012G035300 [exp] 49 / 1e-06 AT5G24030 172 / 1e-50 SLAC1 homologue 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [flax] [poplar] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Lus10015133 pacid=23149586 polypeptide=Lus10015133 locus=Lus10015133.g ID=Lus10015133.BGIv1.0 annot-version=v1.0 ATGGAGCCTCAATCCATTACCATGATCAACATCCAAACCAATGACCAAAACCCCCATAAGACACCCCATATCCAAATCACCACAACCACAACCAAAGCTC CAAGAGTACCACCACCACCACCATCATCATCATTCATCTCAATCTTAACCAAGTGTCATGCCGGTTACTTCCGGATAACCCTATCCCTAACTAGTCAAGC CCTCCTATGGAAAATCCTGACTCACTCCCCCTCCATGGCCTACCCTCTCCGGCGGCTTCCTTCTGCTGCCTCTGTCTTCGTATGGTCACTCTCCTCTCTG ACCCTAGCCGCCCTCTCGTCCCTCTACCTCCTCCGATGCCTTCTTCTTTTTCCTTTAGTGAAATCCGAGTTTCTCCACCCTGTTGGGGTGAATTACCTTT ATGCCCCATGGATCTCTTCCGTCCTTCTTCTCCTTGCATGCCCTTTCATCTCTCCCACAACAACGTCGTTTTATGTGCTATGGTGCGTCTTCACCGCCCC GATTGTGGTCTTGGACGTCAAGATCTACGGCCAGTGGTTCACCAAGGGGAAGAGGTTTCTGTCCGACGTGGCCAACCCAACGAGCCTGCTGTCGGTCATC GGGAACCTCGTCGGGGCTCGTGCTGCGGCCGAGATGGGGTGCAAGGAGGTGGCGGTTTGCATGTTCTCCCTTGGCATGGCGCATTACTTGGTGTTGTTTG TCACCCTTTATCAGAGGCTCTCCGGCGGGAACTGCTTGCCGGCGATGCTCCGGCCGGTGTTCTTCCTGTTCTTTGCCGCTCCTAGCATGGCTAGCTTGGC TTGGGGAGGCATCTCAGGGAGGTTTGATACCTCTGCTAAGATGCTCTTCTTTCTCTCCCTCTTCCTCTTCTTGTCCTTGGTTTCAAGGCCGGTCATGTTC AGGAAATCGATGAGGAAGTTCAACATAGCATGGTGGGCATATTGTTTCCCACTAACAGTCTTGGCACTAGCATCTGTGGACTATGCACAAGAAGTTGAGG ACTCAGAAGTTGCTCATGGACTAATGCTTATGTTATCTACTTCATCAATCCTTGTCTCCTTTGCACTAATGGTGCTCACAGCTCTCAACACTAATACCCT TTTCCCAGATGATGATCCTGGATTGTTTAAACTTAAGAACAACAACACTAGTGCCAAGAACAAAATCAGTACAAAGAGTGACTCTATTGCCAAGCCAAGT GGAGAATTGGGGTCTTTGACAATCTTGATTGAGCCTAAAGACATAGTAAATGATAAGAATCAACCCTATGCTCAATGA
AA sequence Show only first row Show all	>Lus10015133 pacid=23149586 polypeptide=Lus10015133 locus=Lus10015133.g ID=Lus10015133.BGIv1.0 annot-version=v1.0 MEPQSITMINIQTNDQNPHKTPHIQITTTTTKAPRVPPPPPSSSFISILTKCHAGYFRITLSLTSQALLWKILTHSPSMAYPLRRLPSAASVFVWSLSSL TLAALSSLYLLRCLLLFPLVKSEFLHPVGVNYLYAPWISSVLLLLACPFISPTTTSFYVLWCVFTAPIVVLDVKIYGQWFTKGKRFLSDVANPTSLLSVI GNLVGARAAAEMGCKEVAVCMFSLGMAHYLVLFVTLYQRLSGGNCLPAMLRPVFFLFFAAPSMASLAWGGISGRFDTSAKMLFFLSLFLFLSLVSRPVMF RKSMRKFNIAWWAYCFPLTVLALASVDYAQEVEDSEVAHGLMLMLSTSSILVSFALMVLTALNTNTLFPDDDPGLFKLKNNNTSAKNKISTKSDSIAKPS GELGSLTILIEPKDIVNDKNQPYAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10015133 [exp]	0	1
AT5G19875			unknown protein		Lus10024507 [exp]	2.0	0.8474
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	7.7	0.8749
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	14.9	0.8490
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	16.6	0.8560
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	27.7	0.8464
AT5G07610			F-box family protein (.1)		Lus10041733 [exp]	33.4	0.8369
AT3G25570			Adenosylmethionine decarboxyla...		Lus10035083 [exp]	37.6	0.8278
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	50.0	0.8186
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10003133 [exp]	51.9	0.8028
AT5G45030			Trypsin family protein (.1.2)		Lus10031785 [exp]	63.2	0.7722

Compare expression of checked genes

Lus10015133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.