Plant FIBer expression Database

Lus10015134 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32500 191 / 2e-61 Stress responsive alpha-beta barrel domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031544
[exp]
296 / 5e-99 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G154900
[exp]
248 / 1e-83 AT2G32500 314 / 5e-108 Stress responsive alpha-beta barrel domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0032 Dim_A_B_barrel PF07876 Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence
>Lus10015134 pacid=23149564 polypeptide=Lus10015134 locus=Lus10015134.g ID=Lus10015134.BGIv1.0 annot-version=v1.0
ATGGCGGGGATTCGAGCTTTGGTGTTGAAAAGACGAGGACGAATCTCCAACAAAAATGTCGAAAACTATACCCATGCTGTTTTCATGCGTTTCCAAAGGA
AGGAAGATGCTGCCAAGTTCTACGAGAACCCTTTCTACTTGGGGATTCTTGAGGAGCACGTAACTCCTCATTGCAATGAGAAGATCTACCTAGATTACGA
ATCTGAAGTGGAAGACGATATCATCCCCATATTTCGTAAAGGAGAGGAATACAACTATGGTCTGGAGTTCATTCATCTTATCGGCTTCAACGATAGTTCG
AATGGTGCCCCGGTGGAAGATGCTTTGGCATCTCTTGCCAAGTTGACCAAAGAATTCCCATCGTTAATCGTTCAATCGACTCACGGTGTGTTTGTAAAGG
GAAGTTCTGAGGCGCTTGAGTTGTTCTTGCGAAGCAAGGAATACAGAGAAGTATGGAGATCGAAATTCGAGAAGATAACCAGAAGATCACTTTCCATCCA
GTTCTCTGTTGACCCGGTCGGAGAGAACATTATGTAG
AA sequence
>Lus10015134 pacid=23149564 polypeptide=Lus10015134 locus=Lus10015134.g ID=Lus10015134.BGIv1.0 annot-version=v1.0
MAGIRALVLKRRGRISNKNVENYTHAVFMRFQRKEDAAKFYENPFYLGILEEHVTPHCNEKIYLDYESEVEDDIIPIFRKGEEYNYGLEFIHLIGFNDSS
NGAPVEDALASLAKLTKEFPSLIVQSTHGVFVKGSSEALELFLRSKEYREVWRSKFEKITRRSLSIQFSVDPVGENIM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G32500 Stress responsive alpha-beta b... Lus10015134
[exp]
0 1
AT5G56850 unknown protein Lus10008560
[exp]
1.4 0.9406
AT2G21370 XK1, XK-1 XYLULOSE KINASE 1, xylulose ki... Lus10041956
[exp]
3.7 0.9354
AT5G09820 Plastid-lipid associated prote... Lus10020860
[exp]
5.3 0.9257
AT2G21960 unknown protein Lus10005779
[exp]
7.1 0.9305
AT5G09820 Plastid-lipid associated prote... Lus10033514
[exp]
7.5 0.9116
AT1G50450 Saccharopine dehydrogenase (.... Lus10027349
[exp]
8.5 0.9223
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Lus10022640
[exp]
9.8 0.9297
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Lus10003337
[exp]
9.8 0.9291
Lus10030090
[exp]
10.2 0.9296
AT5G12130 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURI... Lus10019895
[exp]
10.4 0.8912

Lus10015134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.