Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 182 / 4e-59 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 176 / 1e-56 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 169 / 6e-54 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 160 / 4e-50 Vacuolar iron transporter (VIT) family protein (.1) AT2G01770 49 / 3e-07 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031543 [exp] 313 / 1e-110 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10031922 [exp] 209 / 3e-69 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10042804 [exp] 206 / 4e-68 AT3G43660 276 / 2e-95 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 203 / 8e-67 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 202 / 1e-66 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10029776 [exp] 186 / 2e-60 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 172 / 9e-55 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10025685 [exp] 170 / 6e-54 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G190800 [exp] 192 / 1e-62 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.002G069400 [exp] 191 / 4e-62 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 163 / 3e-51 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 105 / 4e-28 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 74 / 3e-16 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.010G104100 [exp] 47 / 1e-06 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1) Potri.010G104200 [exp] 39 / 0.0007 AT2G01770 384 / 1e-136 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10015135 pacid=23149563 polypeptide=Lus10015135 locus=Lus10015135.g ID=Lus10015135.BGIv1.0 annot-version=v1.0 ATGGAGGTCGAAACCCAGAAGAAGTTAGACCCCGAAGAAGAGGAGCATGACTACAGCAAAAGAGGCCAATGGCTCCGAGCAGCAATACTCGGAGCCAACG ACGGTCTGGTTTCCACTGCATCCCTCATGATGGGAGTGGGTGCAGTGAAGCAGGACGTCAAGGTCATGATCCTGACTGGATTCGTGGGCCTCATAGCTGG GGCCTGCAGTATGGCGATAGGGGAGTTTGTGTCTGTCTATTCGCAGTATGACATAGAGGTTGCTAAAATGAAACGAGACAAAGAGAGAGCTATTATTGAT GGGGTGGGGGCAGAATATAAAGAAAATATTGAAGGAGAGATAATGGAGGGCCTACCGAGCCCGGCCCAGGCCGCATTGGCTTCGGGACTGGCTTTCTCGA TGGGAGCGATGGTGCCGTTGATGGCTGCTTCTTTTATTGACGAGTACAAAGTGCGTGTTGCGGTTGTGACCGGGCGGTGA
AA sequence Show only first row Show all	>Lus10015135 pacid=23149563 polypeptide=Lus10015135 locus=Lus10015135.g ID=Lus10015135.BGIv1.0 annot-version=v1.0 MEVETQKKLDPEEEEHDYSKRGQWLRAAILGANDGLVSTASLMMGVGAVKQDVKVMILTGFVGLIAGACSMAIGEFVSVYSQYDIEVAKMKRDKERAIID GVGAEYKENIEGEIMEGLPSPAQAALASGLAFSMGAMVPLMAASFIDEYKVRVAVVTGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10015135 [exp]	0	1
AT3G22040			Domain of unknown function (DU...		Lus10007506 [exp]	1.0	0.8158
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	6.3	0.7099
					Lus10000914 [exp]	7.7	0.7099
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	8.1	0.6797
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	9.4	0.7031
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	11.2	0.6964
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	16.1	0.6332
					Lus10021381 [exp]	18.7	0.6681
					Lus10028673 [exp]	22.4	0.6380
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	26.2	0.6015

Compare expression of checked genes

Lus10015135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.