Plant FIBer expression Database

Lus10015137 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20720 117 / 2e-27 dentin sialophosphoprotein-related (.1)
AT1G05090 117 / 2e-27 dentin sialophosphoprotein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031541
[exp]
920 / 0 AT4G20720 135 / 1e-33 dentin sialophosphoprotein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G227200
[exp]
325 / 3e-105 AT1G05090 149 / 2e-38 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence
>Lus10015137 pacid=23149587 polypeptide=Lus10015137 locus=Lus10015137.g ID=Lus10015137.BGIv1.0 annot-version=v1.0
ATGGAAGCTCTACCGATTCCCCACGACGAGATTCGCTCCCTCCAGATCTCCCTCCGCAAAGACTCCAACTTTTCCTTCTACAGCCCAGAATCCGACTCCC
CTCCACATCTCCCCGATCCCCCCTCCGCCGGCGAATCAATCGCCGAGCTCGACCCATCGCCGCCCGAACTCCGGTGTCGCCACTGCAATGGCAGGCTCCT
CAGGGGGCTGGATTCGATCGCTTGCATCTTCTGCGGTAGGGAGCAGGTTACCAAGGATGGTCCTCATCTTCATCGACCGATCAAGTTCATGGCCACTTCT
GGGTCCAAGTGGCTCCTCCAGTCTCTCGGCTTGGACGGATCGGAACTTTCAGGCCAATCAATGGAAGATCAACAGCTGAACAGGCGACCGAATGTGGCAC
AAAAGGACATTCCTTTATCTGAACTGTTGGATCTCGAAATACATTGGCCTACGGATTCCGACATTGGGGAAACAAAGGATGAAGTGTTGGAAAGGACAGC
AATTGAGAAGTTGAGAACTCTCGATTTCGAAGGGCTTGATCTCAGCTGTTTCTCCTCCCCTGAGCCTAAGGTGGAAATGGAACCACCTTCTGATTTTCCT
AAACAAGGCCTCAGCTTTTTCCATGATCCTAAGGTAGTAGAATCGGTTTCTGCATCGGTTGATGAAGAACAGCCCGATTTCTTCCCTGAGCCGAGGCTAG
AATCTGCTTCTTTAGCATCTGAAGATCGTAATTTGCCGTCTGTCAGTCAGCCATTTCCTAGTCCTGAAGCTCAAGGTCCTACTGATCTAAGTTTTTTTGA
GAGTGTTCAGCCGGCTCGTACTAAAGATGAAGATGGAGGTGATGACTCCTTTTCTGGCTGGGAAGTTGAGTTTCAGTCTGCTGATTCTGCTGCAGCTCAA
CATCAAGAATCAAAACCATTTGATCCTTTTGAAGGTTCTTCCGCTGTCGATCTTTCGGCTCATTTGGAATCAGTATTTGGAGCTGGAAATGAAGCACCTT
TGGGATCAACAAGTGAGAGCACTATAAGCGATTGGTTTCCAGGTGATATATTGAGTACTTCCACGAATGTTAAAGACGGGGAGGGCATAGAGGCGAAAAC
AGACACTTTCCCTCCAATGGATTTGGATTTCCTCGAAGATAATCGATTTAAAACTGCCAGCAACACCACCGACGCTGGTGGAGATGACTACTTTGATGGC
TGGAATGATTTCACCAGCTCATCAAAGCAGGATGATAGTCTCACTGTCGTACCTCCTCTTGAGAAGGCCTCAGAGATGAACTTGTTTGGTGCTATTGGGA
AATCGGAGAATGTTGACTCTGGTAGCCTCTCCACTGGCTTTCCACAGTCGGATCTCTTCTCCGGGATGTCCAACGATGTAAAGCATTTGAATGAAGTTGA
CATCATGTGGGGTGAAACTTCAGCATCAGAGAGGACGGATGATGGAATCGGAAGAAACGGAGATGACAGTGAAGAACTTGTAGCAGGTGGAGACGTTCTT
CCCGGTACGAATTCAAGCTCGAAACCTGAATTGGTGGAGAAGTACATATCCCAGATGCATGATCTATCATTCATGCTGGAGAACGATATTTCAATGCCAC
AAAAGCAAGATCCTTTGACTACACTTTCCAAGGATTAA
AA sequence
>Lus10015137 pacid=23149587 polypeptide=Lus10015137 locus=Lus10015137.g ID=Lus10015137.BGIv1.0 annot-version=v1.0
MEALPIPHDEIRSLQISLRKDSNFSFYSPESDSPPHLPDPPSAGESIAELDPSPPELRCRHCNGRLLRGLDSIACIFCGREQVTKDGPHLHRPIKFMATS
GSKWLLQSLGLDGSELSGQSMEDQQLNRRPNVAQKDIPLSELLDLEIHWPTDSDIGETKDEVLERTAIEKLRTLDFEGLDLSCFSSPEPKVEMEPPSDFP
KQGLSFFHDPKVVESVSASVDEEQPDFFPEPRLESASLASEDRNLPSVSQPFPSPEAQGPTDLSFFESVQPARTKDEDGGDDSFSGWEVEFQSADSAAAQ
HQESKPFDPFEGSSAVDLSAHLESVFGAGNEAPLGSTSESTISDWFPGDILSTSTNVKDGEGIEAKTDTFPPMDLDFLEDNRFKTASNTTDAGGDDYFDG
WNDFTSSSKQDDSLTVVPPLEKASEMNLFGAIGKSENVDSGSLSTGFPQSDLFSGMSNDVKHLNEVDIMWGETSASERTDDGIGRNGDDSEELVAGGDVL
PGTNSSSKPELVEKYISQMHDLSFMLENDISMPQKQDPLTTLSKD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G20720 dentin sialophosphoprotein-rel... Lus10015137
[exp]
0 1
AT5G38690 Zinc-finger domain of monoamin... Lus10033539
[exp]
3.7 0.8895
AT5G16210 HEAT repeat-containing protein... Lus10009154
[exp]
6.4 0.9019
AT2G26260 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydroge... Lus10010311
[exp]
6.9 0.8471
AT1G73450 Protein kinase superfamily pro... Lus10042297
[exp]
7.5 0.8890
AT3G07140 GPI transamidase component Gpi... Lus10025918
[exp]
15.3 0.8716
AT1G07670 ATECA4 endomembrane-type CA-ATPase 4 ... Lus10042843
[exp]
20.5 0.8759
AT4G31480 Coatomer, beta subunit (.1.2) Lus10039684
[exp]
21.7 0.8671
AT3G63460 EMB2221 transducin family protein / WD... Lus10005323
[exp]
29.2 0.8719
AT4G38200 SEC7-like guanine nucleotide e... Lus10015863
[exp]
29.7 0.8671
AT5G64740 PRC1, IXR2, E11... PROCUSTE 1, ISOXABEN RESISTANT... Lus10006161
[exp]
32.3 0.8446

Lus10015137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.