Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 377 / 3e-128 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 322 / 5e-105 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT2G42850 62 / 4e-10 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT4G15393 61 / 8e-10 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT3G20120 59 / 3e-09 CYP705A21 "cytochrome P450, family 705, subfamily A, polypeptide 21", cytochrome P450, family 705, subfamily A, polypeptide 21 (.1.2) AT4G15396 59 / 4e-09 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT1G65670 57 / 1e-08 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT3G20110 57 / 1e-08 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1) AT4G15330 57 / 1e-08 CYP705A1 "cytochrome P450, family 705, subfamily A, polypeptide 1", cytochrome P450, family 705, subfamily A, polypeptide 1 (.1) AT3G20940 57 / 3e-08 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031540 [exp] 747 / 0 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 623 / 0 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 578 / 0 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 569 / 0 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 537 / 0 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 313 / 2e-101 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 293 / 5e-94 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 290 / 1e-92 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10035295 [exp] 281 / 2e-92 AT4G15440 253 / 4e-83 hydroperoxide lyase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 557 / 0 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.002G130700 [exp] 326 / 3e-106 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 314 / 4e-102 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 311 / 3e-101 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 302 / 4e-97 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 300 / 6e-97 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 276 / 8e-88 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.019G078600 [exp] 66 / 3e-11 AT5G36110 476 / 2e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.002G069600 [exp] 64 / 1e-10 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.011G155600 [exp] 61 / 8e-10 AT5G36110 388 / 4e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10015138 pacid=23149600 polypeptide=Lus10015138 locus=Lus10015138.g ID=Lus10015138.BGIv1.0 annot-version=v1.0 ATGCCGGGGGTACCCATGACAGCAAGAATAATGGCCTCCTCCTCCTTCTCCTCATCCCCCAACTATTCCACCTCCACCTCAACCTCCACCGCCAAACCCC CATCACCTCCTCCCCAGCTCCGGCCGATCCCGGGATCCCACGGGTGGCCGGTGGTGGGGCCGATGCGTGACAGGCTAGACTACTTCTGGTTCCAAGGCCC CGAGGTGTTCTTCAAGAAGAGGATGGAGAAGTACAAGTCGACGGTTTTCCGTACGAACGTCCCGCCGGCGTTCCCTTTCCTCGGCGCCGGAGTTAACCCG AACGTGGTGGCGGTTCTCGACTGTCGGTCGTTCTCCCACATGTTCGATATGGAGGTCGTCGAGAAGAAGGACGTCCTTGTCGGAGACTTCATGCCTAGTG TTGGGTTCACCGGGAATATGAGGACTTGCGCTTATCTCGATACCTCTGAAGCTAAACATGCTCAGACGGAGCACCAAGATGTGGCTCTCGGAGCTCCAGG TCAACATGGACCAGATGTGGGCCACTGTCGAATCCAAGCTGTCGTCCAAACCGAGTGCCGGCATCTTCTTGCCACTTCAGCAGGCCATGTTCAAGTTCCT GACCCGTTGATCGGAGCTGACGTGGATGATGACATGGCTAAGTCCGGCCCCATCATCATCGACACATGGCTAGGACTCCAGCTCCTCCCTACAGTCAGCA TCAACGTCATCCAACCTCTTGAAGAGATCTTCCTCCACTCCTTTCCTTACCCCTCTTTCCTAGTCAGCAGTGGGTACAATAAGCTTGCTGACTTCATCAG GACTCAAGGACGAGAAGTGGTTCAACTCGGAGTGAACGATTTCGGGCTGAGCGAGGAAGAAGCAGTTCACAACCTCCTGTTCACCCTAGGATTCAATGCA TTTGGCGGCTTTTCGGTTTTCCTACCCAGCCTATTCAGCCGGTTACTCAGCGACAAAACCTGTTTACAAGACCGCCTCCAGAGGGAAAACGGTGGACCCA ACTTGACATTCGACTCGGTCAAGCAAATGCCCCTCATCCAATCCGTCATCTACGAGACTCTCCGGGTTAGCCCACCCGTTCCCAACCAATTTGCTAGAGC TAGAAAGGACTTCCAACTCAGCTCGTACGAAGCGTCGTACGAGGTGAAGAAGGGCGAGCTCCTGTTCGGGTTCCAGCCCTTGGTGATGAAGGACCCGATG GTTTTTGACGACCCGGAGAGCTTTCAACCGGACCGGTTCATGGGCACGAAAGGGGAAGAGTTGTTGAACTATTTGTACTGGTCGAACGGACCGCAAACCG GGTCGCCTAGTGAGTTGAATAAGCAGTGCGCGGGTAAAGACATCGTCACCCTCACTGCAACATTGATTGTGGCTCACTTGTTCCAGCGGTATGACTCCAT AAGTGGGGATGGCTTGAACATCACAGCTCTTGAAAAGGCTAGCTAG
AA sequence Show only first row Show all	>Lus10015138 pacid=23149600 polypeptide=Lus10015138 locus=Lus10015138.g ID=Lus10015138.BGIv1.0 annot-version=v1.0 MPGVPMTARIMASSSFSSSPNYSTSTSTSTAKPPSPPPQLRPIPGSHGWPVVGPMRDRLDYFWFQGPEVFFKKRMEKYKSTVFRTNVPPAFPFLGAGVNP NVVAVLDCRSFSHMFDMEVVEKKDVLVGDFMPSVGFTGNMRTCAYLDTSEAKHAQTEHQDVALGAPGQHGPDVGHCRIQAVVQTECRHLLATSAGHVQVP DPLIGADVDDDMAKSGPIIIDTWLGLQLLPTVSINVIQPLEEIFLHSFPYPSFLVSSGYNKLADFIRTQGREVVQLGVNDFGLSEEEAVHNLLFTLGFNA FGGFSVFLPSLFSRLLSDKTCLQDRLQRENGGPNLTFDSVKQMPLIQSVIYETLRVSPPVPNQFARARKDFQLSSYEASYEVKKGELLFGFQPLVMKDPM VFDDPESFQPDRFMGTKGEELLNYLYWSNGPQTGSPSELNKQCAGKDIVTLTATLIVAHLFQRYDSISGDGLNITALEKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	2.0	0.9774
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	2.8	0.9725
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	3.0	0.9752
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	3.2	0.9769
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	3.9	0.9664
AT2G15020			unknown protein		Lus10013880 [exp]	6.0	0.9454
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	6.6	0.9441
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	7.2	0.9410
					Lus10020641 [exp]	7.3	0.9587
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	7.5	0.9489

Compare expression of checked genes

Lus10015138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.