Plant FIBer expression Database

Lus10015139 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32590 39 / 0.0007 EMB2795 EMBRYO DEFECTIVE 2795, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030028
[exp]
41 / 0.0001 AT2G32590 721 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
Lus10035296
[exp]
41 / 0.0001 AT2G32590 706 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
Lus10031539
[exp]
39 / 0.0006 AT2G32590 659 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G155900
[exp]
39 / 0.0009 AT2G32590 670 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05786 Cnd2 Condensin complex subunit 2
Representative CDS sequence
>Lus10015139 pacid=23149485 polypeptide=Lus10015139 locus=Lus10015139.g ID=Lus10015139.BGIv1.0 annot-version=v1.0
ATGGGGGAGGAGATCTTGAGCCCGAATCCTGTGCAGAAGCAGCAGGACCTCTCTTTCTCGGCTCGAACAACAACCAGCTCGAGCGAACCCAGGCACGCGC
CGCCGCCATCCGCCGCCATCCGCCGCAAGCACGCCGCCGCCGCCGTCAATGCTCCACCCCGCCGCCTTCGTCGTCTGCCGACGCAGACTCCTCACACCCT
TGCTACCTCACCAAGCAGCAGATCCTTGACATCTTCAACAACTGCATCAAACTCGCCAGTGAAAATGTCTGATGCTTCATCTGCGGATGCCAATGGTAAT
GCTGGAAAAGAGGATGGTAAAAGGAAAGAGGAGGAGGAAAAGATATCTCCTTTGTCAACACTTAAACCTTCGTTTGAGGCTCTTAATGTGAAGAAGCTAG
ATGGTAATCTTATCTTATGA
AA sequence
>Lus10015139 pacid=23149485 polypeptide=Lus10015139 locus=Lus10015139.g ID=Lus10015139.BGIv1.0 annot-version=v1.0
MGEEILSPNPVQKQQDLSFSARTTTSSSEPRHAPPPSAAIRRKHAAAAVNAPPRRLRRLPTQTPHTLATSPSSRSLTSSTTASNSPVKMSDASSADANGN
AGKEDGKRKEEEEKISPLSTLKPSFEALNVKKLDGNLIL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Lus10015139
[exp]
0 1
AT3G28370 unknown protein Lus10014503
[exp]
1.0 0.9364
AT3G13960 GRF ATGRF5 growth-regulating factor 5 (.1... Lus10033441
[exp]
13.2 0.9338
AT2G02540 ZF_HD ATHB21, ZFHD4, ... ZINC FINGER HOMEODOMAIN 3, ZIN... Lus10038135
[exp]
15.7 0.9327
AT2G35640 Trihelix Homeodomain-like superfamily p... Lus10040628
[exp]
15.7 0.9261
AT5G58280 B3 AP2/B3-like transcriptional fa... Lus10017434
[exp]
17.4 0.9309
AT1G52290 AtPERK15 proline-rich extensin-like rec... Lus10023581
[exp]
22.3 0.9097
AT1G68480 C2H2ZnF JAG JAGGED, C2H2 and C2HC zinc fin... Lus10041443
[exp]
23.4 0.9215
AT2G27880 AGO5 ARGONAUTE 5, Argonaute family ... Lus10014386
[exp]
25.1 0.9237
AT3G02645 Plant protein of unknown funct... Lus10031159
[exp]
27.6 0.9212
AT2G45190 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, AB... Lus10032240
[exp]
28.8 0.9205

Lus10015139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.