Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15420 742 / 0 Ubiquitin fusion degradation UFD1 family protein (.1) AT2G21270 118 / 2e-29 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G38930 116 / 8e-29 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G29070 116 / 8e-29 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT1G09920 66 / 5e-12 TRAF-type zinc finger-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031538 [exp] 1000 / 0 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10018057 [exp] 108 / 1e-25 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 104 / 4e-24 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 102 / 2e-23 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 74 / 4e-14 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 72 / 3e-13 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10042917 [exp] 61 / 2e-10 AT1G09920 257 / 4e-88 TRAF-type zinc finger-related (.1) Lus10028213 [exp] 58 / 2e-09 AT1G09920 256 / 2e-87 TRAF-type zinc finger-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156300 [exp] 811 / 0 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Potri.004G163200 [exp] 113 / 2e-27 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 112 / 4e-27 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 110 / 1e-26 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.002G109800 [exp] 65 / 9e-12 AT1G09920 273 / 1e-94 TRAF-type zinc finger-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF03152 [flax] [poplar] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Lus10015140 pacid=23149569 polypeptide=Lus10015140 locus=Lus10015140.g ID=Lus10015140.BGIv1.0 annot-version=v1.0 ATGGATTTCGAGCTGAGAAGGGCGAGGGAGAAGCTGGAGAAGGAGCAGAAAGAGCGGAAGGAGAAAGCCAGATTGAGACTCGCCAGAGAGAAGAAGGCCA AGGAAGAAGCTCGCAAGCAGCGAGAAGCTCTTGAATCGGTCCAGCGATCTCGCCGCCTTGAAGCCGCCGAAGCTCAGCTCAAGGCGGATGAGGAAATGCA AGAGAATTTGATTGTTGGGAGAGGAATTGTGTTCTCTCGAGTGTTAGAAGCTGTAGGTTTCCAAGGAAGTGGGGATAGGATCAAATTGCCTCCTTCGTGT TTCACTGAGTTGTCTGATCAAGGTGCGTTTGATAAAGGTCCATTGTACTTCCAATTATCAGTAGTTGGTGGTTCGGAGTCCACAAATTCGGGTGTTCTCG AGTTTACAGCGGAGGAAGGGAAGGTTGAGCTTCCTCCTCATGTATGGAGCAACCTGTTTTCTATTGAGACGAATATGGATGTTCCCATGGTCGAGATTCG ATATGTCTGGTTACCTAAAGGAACGTATGCGAAGCTCCAGCCGAATGTGGTGGGGTTTTCGGACATTCCTAATCATAAGGCGGTGCTCGAAACGAGCCTG AGGCAGCACGCTACTCTCTCGGAAGGTGACGTGATTAATGTGAATCATGGGGTGTTGAGCTACAAGCTGAGAGTGCTCGAGTTGAAGCCTTCGAGCAGCG TGTCAGTTCTGGAGACGGATGTTGAGGTTGATATCGTTGGTTCGGATTCGCCTGTGGATGAAGGGTCGGATCAGCATGTATTGAAGGCACTGACGTTTGG AGTTTCGGAATCTGGAATGGTTCAAGAGGGGAAATACAAGTATTATAAGTTCTCGGTTGATGATCTTATTTGGGAAACTATTACATCCGGTGATGTAATG ATTGAGGTGAAGGTCGAGGTTGAGACCGACGATGGTGATACCGATCTTTACATTTCCAAGCATCCTCTCCTTTTCCCCAACCGGCACCAGCACGAATGGT ATTCACACGACATGGGTTCGAAAGTGCTGTTCCTGACCTCCAAAGACAAGAACTTGGGAGTCGGAACTTACAGCGTTGGTGTCTACGGTTTCAAAGGAAC AGCCAAGTACAAGGTTTCGGTCAGTGTGCAGGATAACAACACTTCGAAAGCAGGAAAGCAAGCTGGTTCCACATCATTGTCATCATCGATGGATGTAGAT GCTGTCGAGTGCAGAAATTGCAAGCATTTCATACCTAGTAGGAGCATATCGCTGCACGAAGCCTATTGCGCCAGGCACAATGTAGCTTGTAAGCATCCTG GCTGTGGAGTTGTTCTTAGAGTTGGCGAGGCCCAGAACCATGTTCATTGCGATAAGTGTGGGCTGGCTTTCCACAAGGACGAAATCGATAAGCACACCAA GGTCTTCCACGAGCCGGTTCAGTGTCCCTGCGGCGTTGTTCTTGAGAGGGAACCAATGGTCCAGCATCAGGCTTCAGTATGTCCGCTGCGGCTAATCACT TGCAGGTTCTGTGGCGACATGGTTCGAGCTGGGAGTTCGGCCGCGGACACGAGAGACAGAATGCGCGGGCTTACGGAACATGAGAGCCTATGCGGGTCGA GAACTGCGCCGTGTGATTCGTGTGGCAGGTCTGTGATGCTGAAGGAGATGGACATTCACCAGGTTGCTGTTCATCAGAAGGGTTGA
AA sequence Show only first row Show all	>Lus10015140 pacid=23149569 polypeptide=Lus10015140 locus=Lus10015140.g ID=Lus10015140.BGIv1.0 annot-version=v1.0 MDFELRRAREKLEKEQKERKEKARLRLAREKKAKEEARKQREALESVQRSRRLEAAEAQLKADEEMQENLIVGRGIVFSRVLEAVGFQGSGDRIKLPPSC FTELSDQGAFDKGPLYFQLSVVGGSESTNSGVLEFTAEEGKVELPPHVWSNLFSIETNMDVPMVEIRYVWLPKGTYAKLQPNVVGFSDIPNHKAVLETSL RQHATLSEGDVINVNHGVLSYKLRVLELKPSSSVSVLETDVEVDIVGSDSPVDEGSDQHVLKALTFGVSESGMVQEGKYKYYKFSVDDLIWETITSGDVM IEVKVEVETDDGDTDLYISKHPLLFPNRHQHEWYSHDMGSKVLFLTSKDKNLGVGTYSVGVYGFKGTAKYKVSVSVQDNNTSKAGKQAGSTSLSSSMDVD AVECRNCKHFIPSRSISLHEAYCARHNVACKHPGCGVVLRVGEAQNHVHCDKCGLAFHKDEIDKHTKVFHEPVQCPCGVVLEREPMVQHQASVCPLRLIT CRFCGDMVRAGSSAADTRDRMRGLTEHESLCGSRTAPCDSCGRSVMLKEMDIHQVAVHQKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	0	1
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	5.8	0.8472
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	6.2	0.8496
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10034177 [exp]	6.2	0.8077
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10021946 [exp]	11.7	0.8300
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	12.2	0.8458
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	14.1	0.8155
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	19.3	0.7983
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	21.6	0.8384
AT4G33890			unknown protein		Lus10002119 [exp]	22.9	0.7263
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	24.4	0.8343

Compare expression of checked genes

Lus10015140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.