Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15415 716 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 711 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 671 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 668 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G09880 594 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 592 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G03470 581 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 563 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 522 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031536 [exp] 909 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10030002 [exp] 773 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 772 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10032082 [exp] 692 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10036926 [exp] 640 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10037057 [exp] 637 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10011381 [exp] 608 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10006440 [exp] 605 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10023920 [exp] 599 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157000 [exp] 757 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 742 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 695 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 694 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 687 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 680 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 676 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 614 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 603 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 566 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10015144 pacid=23149606 polypeptide=Lus10015144 locus=Lus10015144.g ID=Lus10015144.BGIv1.0 annot-version=v1.0 ATGATCAAGCAGATATTGCAGAAGCTACCTCGCAAACCATCGAAATCGTCGAGTAATGAGAGCAGCAATGGTGATGCAGCTGGATTCAATGGTTACTCTT CCAACAACTCGAATCCAGCTCCGGTTAGTTCGAAATTGGTTGGAAATCCGTTTCCTGCTTCGGGTGTTTACGAGCCATTGCCTAGCTTCCGAGACGTTCC CGCCACGGAAAAGCAGAATCTCTTCATCAGAAAGCTGCAAATGTGCTGCGTGGTGTTTGATTTCACCGATCCGACGAAGCATCTCAAGGAGAAAGACGTC AAGAGGCAGACTTTACTTGAGCTGGTTGACTATGTTACCTCCGGAACGATGAAGTTCAACGAGATTGCAATGCAGGAGATCACCAAAATGGTCTCGACGA ATCTGTTCAGAGTGCTTCCCGCCACGAACAAGATTCTCGAAATGTACGACTTGGAAGAGGAAGAGCCGACGATGGAACCTTCCTGGCCGCACCTCCAGAT TGTTTACGAGCTTCTCCTTCGGTTCGTGGCCTCCTCGGAGACTGATGCTAAGCTTGCTAAGCGATATATTGACCATTCGTTTGTGTTGAAGCTGCTTGAT TTGTTCGATTCGGAGGATCAGAGGGAGAGGGAGTTTTTGAAGACGATCACGCATCGTGTCTATGGGAAATTCATGGTTCATAGGCCTTTCATAAGGAAAT CCATCAATAATATATTCTACAGGTTCGTTTTCGAAACGGAGAGGCATAACGGGATTGCTGAGATGCTCGAGATACTGGGGAGTATTATTAACGGATTTGC CTTGCCGTTGAAGGAAGAGCATAAGTTGTTTTTAGTTCGTGCTTTGATTCCGCTTCATAAGGTTAAATGCGTATCATTGTATCACCAGCAGCTCTCTTAC TGCATAACTCAGTTTGTGGAGAAAGATGTCAAGCTTGCTGATACTGTGATTCGAGGGCTTTTGAGGTATTGGCCCTTGACGAATAGTTCGAAGGAAGTGA TGTTCCTTGGTGAGTTGGAAGAAGTTTTGGAAGCTACTCAGGTGGCTGAGTTTCAGCGGTGTATGGTCCCGTTGTTCCGGCAGATTGCTCGCTGCCTCAA CAGTTCTCATTTTCAGGTGGCGGAACGTGCGCTGTTTCTATGGAACAACGACCACATACGAAACCTAATCACTCAGCAGCAGAAGATCATCCTCCCCATC ATCTTCCCAGCACTAGAAAGGAACACCAGGGGACACTGGAACCAAGCTGTTCAAAGCCTGACACTAAACGTGAGGAAGATCTTCTCCGACTCCGATGCAG AGCTCTTTGACCAATGCTTGTCCAAGTTCCAAGAAGACGAAGCCAAGGAGAGGGAAGCAACCGAGAGGCGCCAGCTGATCTGGCAGCGGCTGGAAGACAT TGCAGCCGCCTCCACCACAGCAGCTGTGCTAGCCTCGAGGCTTGCCACCTCGGTCGCCATTCCAACCGGACTGAGTCCGCAAGCTTCGATCGGTTAG
AA sequence Show only first row Show all	>Lus10015144 pacid=23149606 polypeptide=Lus10015144 locus=Lus10015144.g ID=Lus10015144.BGIv1.0 annot-version=v1.0 MIKQILQKLPRKPSKSSSNESSNGDAAGFNGYSSNNSNPAPVSSKLVGNPFPASGVYEPLPSFRDVPATEKQNLFIRKLQMCCVVFDFTDPTKHLKEKDV KRQTLLELVDYVTSGTMKFNEIAMQEITKMVSTNLFRVLPATNKILEMYDLEEEEPTMEPSWPHLQIVYELLLRFVASSETDAKLAKRYIDHSFVLKLLD LFDSEDQREREFLKTITHRVYGKFMVHRPFIRKSINNIFYRFVFETERHNGIAEMLEILGSIINGFALPLKEEHKLFLVRALIPLHKVKCVSLYHQQLSY CITQFVEKDVKLADTVIRGLLRYWPLTNSSKEVMFLGELEEVLEATQVAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNDHIRNLITQQQKIILPI IFPALERNTRGHWNQAVQSLTLNVRKIFSDSDAELFDQCLSKFQEDEAKEREATERRQLIWQRLEDIAAASTTAAVLASRLATSVAIPTGLSPQASIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10015144 [exp]	0	1
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	4.0	0.8564
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	5.7	0.8451
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	6.9	0.8386
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	7.3	0.8464
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	10.2	0.8433
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	12.2	0.8284
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	14.1	0.7982
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	17.0	0.8364
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	17.7	0.8384
					Lus10009045 [exp]	17.9	0.7920

Compare expression of checked genes

Lus10015144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.