Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04210 134 / 6e-36 PUX4 plant UBX domain containing protein 4 (.1) AT4G22150 125 / 3e-32 PUX3 plant UBX domain-containing protein 3 (.1) AT4G15410 113 / 2e-27 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) AT3G21660 61 / 9e-10 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030005 [exp] 166 / 9e-47 AT4G15410 407 / 6e-140 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10035318 [exp] 174 / 9e-17 AT4G15410 414 / 3e-142 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10031535 [exp] 0 / 1 AT4G15410 353 / 2e-119 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225800 [exp] 164 / 3e-46 AT4G15410 362 / 2e-122 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Potri.004G004200 [exp] 146 / 2e-40 AT4G22150 404 / 2e-141 plant UBX domain-containing protein 3 (.1) Potri.011G011300 [exp] 131 / 5e-35 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.006G270300 [exp] 131 / 5e-35 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.014G157200 [exp] 128 / 6e-33 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1) Potri.011G005000 [exp] 105 / 1e-25 AT4G04210 358 / 3e-125 plant UBX domain containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08059 [flax] [poplar] SEP SEP domain
Representative CDS sequence Show only first row Show all	>Lus10015145 pacid=23149611 polypeptide=Lus10015145 locus=Lus10015145.g ID=Lus10015145.BGIv1.0 annot-version=v1.0 ATGGAATCCGCCAGCGAGAAGAAGATCGGTCCCACCGACGCCGACATCACTGCGCTGGTCAATTCCTTCAGCGAGATCACCTCCTCCACAAGGGAGGAAG CCGCTTTCTACTTGGAGAGCCACCAGTGGGATCTCGACACCGCCGTCTCCACCTTCCTCGACCACGACAACAACGCCGCCTCAGCTCTCCTCGAGGCCTC CGCCGCCGCTCACGCTGCTCATCCTCCTGCGGGCGAGCACGCTCCTCCGTTGTCTCCCCCTAGGTCGCGATCGCGGTCGCTGTCTCCCGCTCCGGCGAGT GCTTCTAGGTTGCCTCAGGAGCCGAGATCGAAGGAGGATAAGAAAAAGAAGAAGAAGAGCTCCAGTGGTGCCAGTGGGAGTAGGAATCGCGGCGGAATCA GGACTTTGGCTGATCTGAATCGGAATACTGCTGGTTCGGATAGTGATGATGATGAGGATGATGACGAGGAGATGCAGGAGTATTATACTGGTGGTGAGAA GAGCGGAATGCTGGTCCAAGATCCTTCGAAGAACTACGATGCAGATGCAATATTCGATCATGCTAAAAATTCTTTGGCAGTTCAAAGGCCTGAGGATATT GCTCGGGCTACTGCTGCTGCTTCAAAGAGCTTTACTGGAACAGGGAGGCTACTCTCTGGAGAGACGGTCCAGTCTACTCCCCAGCCGCCTGCATTTGTCA ATCATACCATCACTCTCTGGAGAAATGGCTTCACTGTGGACGATGGTCCTTTGAGGAGGCTAAATGATCCTGCAAATGCTGACTTCCTGGAGGTAATTCG TAACCATCTGCTCTGGTTGTTCTTGTTGATTACGGGTACTGCGGGAGCCAAAGAAGACACCTGCAGCAGCAGCCTTCCAAGGCGTGGGCCGGACTCTAGG CGCCTCGACATCCTCCTCCTCTGCAGCACCGGTCACGACTGCTCCGCAGCCGTCCTCCGGCCTTACCGTGGATTCCTCGTCCCCAACGACATCGATCCAG CTCAGATTGGCGGACGGGACGAGAATGGTCTCCCACTTCAACTTGCACCACACCGTGGGAGATGTCCGCGCTTTCATCGTGGCTTCAAGACCCGGGGAAG CGGCCAACTTCCACCTGCAGACTATGGGGTTCCCTCCCAGACAGCTCAACGATCCGACTCAGACGATACAGGATGCCGGAATCGCGAATTCCGTCGTCAT CCAGAAATTCTAGCGGCTGTCTCTAGTTTCCCTGTTTGA
AA sequence Show only first row Show all	>Lus10015145 pacid=23149611 polypeptide=Lus10015145 locus=Lus10015145.g ID=Lus10015145.BGIv1.0 annot-version=v1.0 MESASEKKIGPTDADITALVNSFSEITSSTREEAAFYLESHQWDLDTAVSTFLDHDNNAASALLEASAAAHAAHPPAGEHAPPLSPPRSRSRSLSPAPAS ASRLPQEPRSKEDKKKKKKSSSGASGSRNRGGIRTLADLNRNTAGSDSDDDEDDDEEMQEYYTGGEKSGMLVQDPSKNYDADAIFDHAKNSLAVQRPEDI ARATAAASKSFTGTGRLLSGETVQSTPQPPAFVNHTITLWRNGFTVDDGPLRRLNDPANADFLEVIRNHLLWLFLLITGTAGAKEDTCSSSLPRRGPDSR RLDILLLCSTGHDCSAAVLRPYRGFLVPNDIDPAQIGGRDENGLPLQLAPHRGRCPRFHRGFKTRGSGQLPPADYGVPSQTAQRSDSDDTGCRNREFRRH PEILAAVSSFPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10015145 [exp]	0	1
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10007833 [exp]	5.5	0.7047
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	13.1	0.7387
AT2G31600			unknown protein		Lus10025558 [exp]	14.2	0.6572
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	15.9	0.7336
AT1G16840			unknown protein		Lus10033369 [exp]	24.9	0.6858
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	28.8	0.7127
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	28.8	0.7066
					Lus10027443 [exp]	33.3	0.6778
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	36.9	0.6664
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	39.9	0.6699

Compare expression of checked genes

Lus10015145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.